Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014961.1 Corchorus capsularis cultivar CVL-1 contig14982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16139

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1260--1316
20
2.9
18
84
12
60
77
0
22
0
0.77
1267--1299
11
2.9
11
95
4
57
81
0
18
0
0.68
1254--1316
12
5.1
12
81
13
58
76
0
22
1
0.88
1597--1683
26
3.4
26
62
17
65
32
12
10
44
1.76
1580--1775
50
3.9
50
93
1
331
34
12
11
41
1.80
2236--2269
8
4.2
8
84
0
50
29
20
0
50
1.49
2226--2417
58
3.3
58
91
0
294
25
22
11
40
1.88
2320--2417
34
3.2
34
63
31
92
22
21
14
41
1.89
2429--2624
14
14.3
14
65
25
66
29
22
3
44
1.70
2430--2490
20
3.1
19
86
9
70
32
21
1
44
1.62
2498--2663
22
7.5
22
72
14
126
28
22
4
43
1.74
2498--2576
28
3.0
27
70
21
78
31
22
3
41
1.72
2563--2613
8
6.6
8
78
17
54
29
17
5
47
1.71
2764--3178
8
55.2
8
63
20
80
29
21
5
42
1.76
2895--3116
22
10.1
22
74
13
104
29
22
5
42
1.75
2849--3178
58
5.7
57
80
8
319
30
22
5
42
1.76
2895--3085
96
2.0
96
85
4
260
30
20
5
42
1.76
3520--3546
3
9.0
3
100
0
54
66
0
0
33
0.92
5030--5071
21
2.0
20
86
13
59
16
16
14
52
1.75
5774--5898
52
2.4
51
82
6
171
31
16
15
37
1.89
9521--9548
11
2.5
11
100
0
56
46
7
10
35
1.66
9826--9915
40
2.3
38
84
9
119
34
20
16
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13027--13064
20
1.9
20
88
0
58
28
5
21
44
1.73

Tables:   1

The End!