Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014962.1 Corchorus capsularis cultivar CVL-1 contig14983, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4445
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30


Found at i:234 original size:24 final size:24

Alignment explanation


    Indices: 206--252  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        196 TACTAATGCT

                             *      
        206 AAATTACTAATTAAAAATATTCTA
          1 AAATTACTAATTAAAAACATTCTA

                                   
        230 AAATTACTAATTAAAAACATTCT
          1 AAATTACTAATTAAAAACATTCT

        253 TGTGTTTTTG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36


Consensus pattern (24 bp):   
AAATTACTAATTAAAAACATTCTA
Done.