Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014968.1 Corchorus capsularis cultivar CVL-1 contig14989, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10759
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:4000 original size:6 final size:6

Alignment explanation


    Indices: 3986--4024  Score: 60
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       3976 AAAGCAAAGC

                *                                  *     
       3986 AAATAT AAATCT AAATCT AAATCT AAATCT AAATTT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       4025 GCAGAATTAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   31  1.00

ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33


Consensus pattern (6 bp):   
AAATCT

Found at i:4990 original size:10 final size:10

Alignment explanation


    Indices: 4975--4999  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       4965 GAGGACTCTA

                      
       4975 GAATTTTCTG
          1 GAATTTTCTG

                      
       4985 GAATTTTCTG
          1 GAATTTTCTG

                 
       4995 GAATT
          1 GAATT

       5000 GTGCAGCAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG
Done.