Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014969.1 Corchorus capsularis cultivar CVL-1 contig14990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6890
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32


Found at i:1378 original size:10 final size:10

Alignment explanation


    Indices: 1363--1387  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       1353 GAGGACTCTA

                      
       1363 GAATTTTCTG
          1 GAATTTTCTG

                      
       1373 GAATTTTCTG
          1 GAATTTTCTG

                 
       1383 GAATT
          1 GAATT

       1388 GTGCAGCAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG
Done.