Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014970.1 Corchorus capsularis cultivar CVL-1 contig14991, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88854

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4535--4579
8
5.9
8
89
7
67
53
24
0
22
1.46
4535--4571
15
2.5
15
100
0
74
54
27
0
18
1.44
4531--4580
23
2.2
24
85
10
77
52
26
0
22
1.48
9355--9488
26
4.7
29
72
27
90
38
26
15
19
1.92
9353--9596
58
4.3
57
79
10
261
38
27
14
19
1.90
9495--9596
30
3.4
30
78
10
100
38
30
13
17
1.89
9677--9705
2
14.5
2
100
0
58
48
0
0
51
1.00
11219--11249
16
1.9
16
93
0
53
54
22
6
16
1.64
15845--15884
13
3.1
13
85
0
53
45
15
15
25
1.84
18419--18447
2
14.5
2
100
0
58
51
0
0
48
1.00
30697--30759
19
3.3
18
78
10
63
26
0
15
57
1.39
30719--30759
18
2.3
18
83
8
57
24
0
17
58
1.38
35204--35267
30
2.2
28
84
12
94
25
6
25
43
1.77
35212--35279
30
2.3
30
94
0
118
29
7
27
35
1.84
46358--46392
16
2.2
16
100
0
70
45
17
25
11
1.81
46437--46658
89
2.4
89
88
5
331
35
13
19
31
1.91
46743--46927
104
1.8
101
81
8
232
37
24
12
25
1.91
48899--49083
90
2.1
90
95
3
338
24
22
18
34
1.96
49145--49242
33
3.0
33
90
0
151
11
24
42
21
1.85
55676--55791
33
3.5
32
83
6
142
11
21
43
23
1.84
57226--57328
32
3.3
32
85
11
151
26
27
15
31
1.96
59568--59592
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63678--63711
16
2.1
16
100
0
68
44
0
23
32
1.54
65475--65682
103
2.0
103
100
0
416
31
22
13
32
1.93
79596--79759
86
1.9
83
84
6
213
45
9
17
27
1.80
80452--80519
28
2.3
30
82
5
77
30
26
23
19
1.98

Tables:   1

The End!