genome.fa.s14972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014972.1 Corchorus capsularis cultivar CVL-1 contig14993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80821

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382--548	31	5.3	31	81	2	136	17	20	25	37	1.94
428--532	31	3.4	31	86	2	147	14	20	24	40	1.90
428--545	32	3.8	32	85	3	150	14	20	25	39	1.90
2200--2238	10	3.9	10	82	0	51	43	17	5	33	1.72
2200--2238	20	2.0	20	94	0	69	43	17	5	33	1.72
3257--3299	12	3.5	12	93	6	77	25	23	16	34	1.95
8157--8187	2	15.5	2	100	0	62	48	0	0	51	1.00
14558--14746	99	1.9	102	83	6	249	33	23	17	25	1.97
14884--14981	18	5.4	18	83	0	124	35	33	22	8	1.84
19759--19798	2	20.0	2	90	10	64	47	2	0	50	1.14
23870--23926	27	2.1	27	100	0	114	31	35	3	29	1.75
27264--27457	99	2.0	99	94	0	343	37	26	19	17	1.93
28518--28545	12	2.3	12	100	0	56	17	14	0	67	1.22
29003--29042	21	1.9	21	100	0	80	40	17	5	37	1.72
29111--29270	24	6.3	24	76	17	146	41	16	23	18	1.89
29162--29219	30	1.9	30	92	0	98	39	17	25	17	1.91
29574--29623	3	16.7	3	91	8	84	64	0	0	36	0.94
29780--30373	294	2.0	294	98	0	1143	36	17	14	31	1.90
37127--37165	6	6.5	6	96	0	51	41	33	25	0	1.56
37127--37165	12	3.2	12	92	0	60	41	33	25	0	1.56
37131--37167	3	12.3	3	88	0	56	37	35	27	0	1.57
37538--37581	3	14.7	3	85	0	61	38	34	27	0	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38411--38492	29	2.9	29	85	1	94	30	3	24	41	1.72
43979--44111	38	3.3	38	65	20	97	36	18	7	38	1.79
43970--44135	85	2.0	85	91	0	269	35	18	7	39	1.78
46342--46427	42	2.0	43	88	2	129	34	27	15	22	1.94
61457--61615	79	2.0	80	93	3	277	35	11	21	30	1.90
62222--62265	21	2.0	24	86	13	67	36	34	0	29	1.58
63480--63623	55	2.6	55	96	2	263	22	11	8	57	1.60
63480--63569	30	3.2	30	65	26	86	22	11	7	58	1.57
63504--63594	30	3.2	30	65	26	72	20	8	8	61	1.52

Tables:   1

The End!