Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014973.1 Corchorus capsularis cultivar CVL-1 contig14994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4805
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:23 original size:14 final size:14

Alignment explanation


    Indices: 4--31  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

          1 GGG

                          
          4 GGACAAAACATTTT
          1 GGACAAAACATTTT

                          
         18 GGACAAAACATTTT
          1 GGACAAAACATTTT

         32 ATATTTATTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29


Consensus pattern (14 bp):   
GGACAAAACATTTT

Found at i:1509 original size:2 final size:2

Alignment explanation


    Indices: 1502--1535  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1492 AAATTGTCTT

                                                              
       1502 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1536 CACGCACGCG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:4781 original size:2 final size:2

Alignment explanation


    Indices: 4774--4805  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       4764 ATCAAAACCT

                                                           
       4774 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.