Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014975.1 Corchorus capsularis cultivar CVL-1 contig14996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55926

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
389--461
37
2.1
34
87
7
101
36
5
9
47
1.59
621--661
21
2.0
21
90
0
64
26
7
34
31
1.84
709--764
2
28.0
2
96
0
58
39
0
10
50
1.37
2499--2536
2
19.0
2
94
0
67
50
0
47
2
1.15
5864--5935
37
2.0
36
89
8
110
56
8
0
34
1.29
6334--6414
40
2.0
40
90
0
126
45
18
9
25
1.80
6937--6961
2
12.5
2
100
0
50
48
0
0
52
1.00
24621--24726
52
2.0
52
96
0
194
43
17
19
18
1.88
26391--26453
30
2.1
30
100
0
126
39
9
15
34
1.80
30998--31038
16
2.6
16
100
0
82
36
53
0
9
1.34
32122--32167
6
7.8
6
90
9
69
0
0
15
84
0.62
32676--32701
13
2.0
13
100
0
52
38
23
15
23
1.92
33541--33579
19
2.0
21
90
10
64
76
2
17
2
1.01
40346--40494
3
49.7
3
72
5
50
32
11
34
21
1.89
40347--40492
12
11.9
12
72
9
62
32
11
34
20
1.89
40403--40494
15
6.1
15
84
0
112
32
14
36
16
1.88
40416--40492
27
2.9
27
86
0
91
33
14
37
14
1.86
45942--46014
36
2.0
36
97
0
137
43
5
15
35
1.69
48887--48924
11
3.5
11
89
10
51
39
0
2
57
1.12
51346--51541
90
2.1
91
93
2
331
40
13
25
20
1.89
51940--52060
45
2.7
44
80
16
140
42
6
27
23
1.79
51976--52057
42
2.0
42
95
0
146
41
8
24
25
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51950--52063
42
2.5
49
75
19
136
43
7
27
21
1.78
51962--52065
42
2.5
42
85
0
145
44
6
26
22
1.77
54841--54882
20
2.0
22
86
13
61
40
14
4
40
1.67

Tables:   1

The End!