Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014978.1 Corchorus capsularis cultivar CVL-1 contig14999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71547

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3713--3737
6
4.2
6
100
0
50
48
0
36
16
1.46
3904--4287
210
1.9
202
86
6
547
30
18
16
34
1.93
6100--6173
23
3.2
23
84
0
85
16
12
25
45
1.81
16681--16707
11
2.5
11
100
0
54
22
0
18
59
1.38
30279--30350
33
2.1
35
87
7
103
8
30
19
41
1.81
37085--37115
2
15.5
2
100
0
62
51
0
0
48
1.00
39918--39993
27
2.8
26
82
13
82
17
10
27
44
1.81
42073--42145
31
2.4
31
80
11
96
46
9
17
26
1.79
42137--42517
44
8.8
45
70
18
217
54
3
20
20
1.60
42226--42481
7
35.7
7
65
13
58
56
3
20
19
1.55
42137--42303
22
7.7
22
76
6
144
54
4
20
20
1.61
42292--42328
15
2.6
14
87
8
56
51
8
24
16
1.71
42376--42517
22
6.5
22
83
4
189
55
2
19
21
1.56
42356--42517
66
2.5
68
85
7
203
56
2
20
20
1.54
42359--42481
7
16.7
7
68
12
59
56
2
19
21
1.53
42554--42605
7
7.6
7
84
4
70
57
1
25
15
1.48
42509--42602
20
5.0
20
72
22
78
56
5
23
14
1.59
42506--42712
88
2.4
87
86
4
274
53
6
25
14
1.64
42602--42644
19
2.2
20
91
4
70
48
11
25
13
1.77
42621--42720
34
2.9
34
80
5
121
53
5
27
15
1.62
42717--42777
21
2.8
22
75
5
61
59
4
9
26
1.50
42760--42826
21
3.1
21
76
18
75
55
5
11
26
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45928--45952
10
2.5
10
100
0
50
48
20
8
24
1.76
46890--46916
6
4.5
6
100
0
54
29
0
14
55
1.40
51416--51473
28
2.1
28
100
0
116
41
3
13
41
1.62
52941--52965
10
2.5
10
100
0
50
48
20
8
24
1.76
53903--53929
6
4.5
6
100
0
54
29
0
14
55
1.40
59682--59736
30
2.0
27
83
16
69
36
7
20
36
1.80
66495--66566
32
2.2
32
90
4
110
50
19
11
19
1.77
66909--66942
16
2.1
16
88
0
50
2
0
23
73
0.97

Tables:   1

The End!