Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014979.1 Corchorus capsularis cultivar CVL-1 contig15000, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23212

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1957--1992
18
2.0
18
88
0
54
58
8
5
27
1.50
4302--4363
11
4.7
14
69
27
55
32
1
9
56
1.41
4302--4369
26
2.6
26
86
9
102
33
1
10
54
1.43
4378--4438
25
2.5
25
89
2
88
42
0
21
36
1.53
6504--6599
45
2.2
44
81
5
113
38
14
12
34
1.84
6687--6772
45
1.9
45
83
4
111
37
15
12
34
1.85
6807--6847
22
1.9
21
85
5
55
31
12
4
51
1.60
6444--6988
181
3.0
181
96
0
1009
36
15
10
37
1.82
6992--7320
22
15.1
22
73
11
144
35
16
9
39
1.80
7264--7358
22
4.6
20
90
5
102
30
17
10
41
1.84
7331--7594
128
2.1
129
97
0
494
35
18
7
38
1.79
7592--7715
22
5.6
22
75
9
83
33
12
11
42
1.79
7568--7693
44
2.9
44
67
9
103
33
11
10
44
1.75
7656--7794
22
6.2
22
72
14
99
35
13
10
41
1.78
7844--7898
22
2.5
23
82
11
71
38
16
5
40
1.72
7859--7909
22
2.3
22
82
0
66
41
19
7
31
1.80
7915--7973
22
2.7
22
79
10
66
35
16
10
37
1.83
8009--8146
22
6.2
21
72
9
78
36
18
9
34
1.84
8045--8147
22
4.6
22
71
11
84
35
16
8
38
1.80
8313--8350
19
2.0
20
85
15
53
63
2
5
28
1.30
8489--8564
38
2.1
35
87
7
107
57
11
17
13
1.64
8667--8729
31
2.0
31
87
6
92
47
4
19
28
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10774--10803
10
3.0
10
95
0
51
23
20
36
20
1.95
11585--11650
31
2.1
31
91
5
107
27
21
4
46
1.70
11958--12000
19
2.1
21
84
16
56
27
6
2
62
1.33
12166--12250
22
3.9
22
74
10
84
37
10
14
37
1.80
12165--12305
22
6.3
22
73
6
77
31
8
20
39
1.83
12341--12399
22
2.7
22
82
10
75
37
8
16
37
1.80
12471--12659
22
8.6
23
74
15
109
42
10
13
33
1.78
12552--12661
44
2.5
44
83
2
141
40
10
12
36
1.77
12740--12787
19
2.5
19
89
3
69
45
10
16
27
1.80
12778--13340
22
25.7
22
70
13
223
38
10
14
35
1.81
12778--13206
66
6.5
66
70
14
264
37
10
15
36
1.81
17447--17494
22
2.2
22
92
0
78
45
4
22
27
1.70
20110--20144
17
2.1
17
88
0
52
5
11
42
40
1.65

Tables:   1

The End!