genome.fa.s14980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014980.1 Corchorus capsularis cultivar CVL-1 contig15001, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35588

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963--1062	26	3.9	26	82	12	127	30	15	12	43	1.82
960--1142	13	14.2	13	70	4	84	28	15	13	42	1.85
960--1119	52	3.1	52	82	5	173	28	15	13	42	1.84
963--1115	26	6.0	26	75	9	118	29	15	13	41	1.85
1041--1143	52	2.0	52	100	0	206	28	17	13	40	1.87
2546--2602	30	1.9	30	88	0	87	38	24	26	10	1.88
3552--3582	2	15.5	2	100	0	62	48	0	0	51	1.00
8389--8751	141	2.6	140	89	5	527	33	15	25	26	1.95
9480--9548	29	2.3	29	85	5	93	49	1	0	49	1.09
9480--9560	31	2.7	28	80	14	90	45	1	1	51	1.16
9480--9563	30	2.8	28	77	15	89	47	1	1	50	1.16
14354--14388	18	1.9	18	94	0	61	37	8	0	54	1.31
15232--15295	5	13.6	5	84	12	91	23	18	0	57	1.40
15232--15297	23	2.8	24	82	13	84	24	18	0	57	1.40
15232--15295	28	2.3	28	97	0	119	23	18	0	57	1.40
16068--16094	2	13.5	2	100	0	54	48	0	0	51	1.00
16110--16237	54	2.4	54	97	0	238	52	2	15	29	1.55
16215--16251	12	3.1	12	88	0	56	45	2	18	32	1.64
16378--16513	69	2.0	69	97	0	254	22	14	19	43	1.87
17021--17093	36	2.0	36	100	0	146	41	19	5	34	1.74
20915--21014	15	6.2	17	66	19	63	37	34	10	19	1.85
20920--21013	32	2.9	32	87	3	136	37	32	10	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20920--21039	32	3.8	32	81	8	106	37	35	10	16	1.84
20920--21039	64	1.9	64	82	6	154	37	35	10	16	1.84
21578--21660	16	5.2	16	71	11	71	54	28	13	3	1.56
21583--21668	32	2.7	32	87	1	120	55	27	11	4	1.55
27403--27441	19	2.0	20	85	14	55	30	5	7	56	1.49
31166--31508	141	2.4	142	86	5	457	34	17	23	23	1.95
33253--33282	2	15.5	2	93	6	53	46	0	0	53	1.00
33516--33545	15	1.9	16	93	6	53	43	0	3	53	1.17
33648--33672	13	1.9	13	100	0	50	28	0	0	72	0.86
33906--34794	339	2.6	332	84	5	1056	35	13	14	36	1.85
35559--35585	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1

The End!