Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014981.1 Corchorus capsularis cultivar CVL-1 contig15002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61036

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1911--1977
31
2.3
28
82
7
80
34
25
25
14
1.94
2498--2543
18
2.5
18
85
3
56
32
13
0
54
1.39
2631--2863
70
3.2
70
81
10
279
36
13
1
48
1.51
2631--2869
78
3.2
77
87
7
332
36
12
1
48
1.50
7504--7550
18
2.6
18
93
6
78
31
38
14
14
1.87
8767--8866
15
6.9
14
70
13
60
30
25
31
14
1.94
13870--13953
42
2.0
42
95
0
150
22
10
35
30
1.88
21421--21451
10
3.1
10
95
0
53
48
29
9
12
1.73
24263--24301
15
2.5
16
87
8
62
20
12
35
30
1.90
39207--39283
31
2.5
31
95
0
136
25
24
24
24
2.00
42559--42685
56
2.3
55
91
4
202
37
29
14
19
1.91
42560--42647
26
3.2
26
72
22
81
35
30
15
18
1.92
42585--42685
29
3.6
27
72
20
91
35
28
13
21
1.92
45320--45381
27
2.3
27
97
0
115
32
32
6
29
1.83
45458--45523
21
3.1
21
76
8
80
25
27
12
34
1.91
45415--45523
42
2.6
42
86
0
146
23
29
11
35
1.89
46936--47008
29
2.4
29
84
4
92
30
30
15
24
1.95
48928--48997
35
2.0
35
97
0
131
21
20
12
45
1.84
50203--50249
22
2.1
22
92
0
76
42
2
6
48
1.40
50384--50417
2
16.5
2
93
6
59
50
0
2
47
1.16
52363--52430
27
2.4
29
85
12
104
35
2
14
47
1.60
53234--53444
104
2.0
104
98
0
404
28
23
25
22
1.99

Tables:   1

The End!