genome.fa.s14982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014982.1 Corchorus capsularis cultivar CVL-1 contig15003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164460

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1564--1601	6	6.5	6	96	3	69	31	0	13	55	1.38
8702--8733	6	5.5	6	96	3	57	31	0	12	56	1.37
29113--29151	18	2.2	17	86	4	51	43	15	20	20	1.88
31641--31673	2	16.5	2	100	0	66	48	0	0	51	1.00
37615--37646	16	2.0	16	100	0	64	31	12	18	37	1.88
49955--50205	125	2.0	125	99	0	493	33	11	19	35	1.87
50782--50841	30	2.0	31	96	3	113	20	16	5	58	1.56
54695--54861	46	3.8	46	77	9	193	37	19	13	29	1.90
54707--54832	40	3.0	40	83	6	144	38	18	13	30	1.89
61479--61552	29	2.5	29	86	6	105	16	31	17	35	1.92
61689--61762	29	2.5	30	82	4	96	35	16	31	17	1.92
62342--62496	79	2.0	79	100	0	310	33	10	16	40	1.82
62941--63011	37	1.9	37	94	0	124	32	14	9	43	1.78
65727--65756	15	1.9	16	93	6	53	33	6	3	56	1.42
74989--75017	13	2.2	13	100	0	58	37	0	27	34	1.57
77463--77521	30	2.0	30	93	0	100	27	33	10	28	1.89
89546--89591	21	2.2	21	92	0	74	39	6	32	21	1.79
105342--105459	24	4.9	24	87	4	166	24	34	11	28	1.91
105339--105586	48	5.2	48	84	5	229	20	33	15	29	1.94
105343--105586	72	3.4	72	82	6	207	20	34	14	30	1.93
105418--105586	24	7.2	24	86	4	209	18	33	16	31	1.93
114414--114469	27	2.0	28	89	3	87	26	5	14	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120274--120342	30	2.3	30	85	7	86	37	18	17	26	1.93
120395--120431	19	1.9	19	94	0	65	29	27	10	32	1.90
122807--122848	22	1.9	22	85	0	57	42	23	14	19	1.87
123338--123396	31	1.9	31	82	6	75	45	6	16	30	1.74
124738--124762	7	3.6	7	100	0	50	32	0	56	12	1.36
125672--125725	22	2.5	22	85	11	67	42	7	11	38	1.68
125801--126209	22	18.8	22	70	14	161	37	15	10	36	1.81
126045--126228	22	8.5	22	72	8	144	35	15	8	41	1.77
125802--126209	44	9.4	43	69	15	182	37	15	10	36	1.81
126360--126715	22	16.0	22	67	11	125	34	16	8	40	1.79
126727--126912	22	8.4	22	71	11	128	36	18	10	35	1.85
129496--130076	231	2.5	228	91	1	923	35	13	16	34	1.87
130100--130156	28	2.0	28	100	0	114	42	7	10	40	1.66
130827--130874	24	2.0	24	88	8	71	54	6	16	22	1.65
131447--131517	35	2.1	34	89	7	108	49	16	5	28	1.69
133190--133265	35	2.3	33	76	14	84	44	3	5	46	1.44
133478--133536	29	2.0	29	86	6	82	35	3	1	59	1.24
134669--134700	4	8.0	4	100	0	64	25	0	0	75	0.81
140306--140330	2	12.5	2	100	0	50	0	48	0	52	1.00
141960--141996	2	18.5	2	100	0	74	51	0	0	48	1.00
148355--148399	15	3.0	15	87	9	65	73	4	0	22	1.01
150220--150281	15	4.1	15	87	0	88	41	29	20	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152845--152891	24	2.0	24	95	0	85	23	6	25	44	1.77
153349--153421	29	2.5	30	84	2	85	42	12	26	19	1.86
156060--156103	22	2.0	23	86	4	63	70	2	6	20	1.21
157826--157856	2	16.0	2	93	6	55	51	0	0	48	1.00
159831--159985	27	5.5	27	75	13	143	30	18	22	29	1.97
159831--160015	30	6.3	29	77	7	144	30	16	23	29	1.96
159830--159986	57	2.7	57	80	11	178	29	18	22	28	1.97
159829--160031	27	7.2	27	72	19	137	29	18	22	29	1.98

Tables:   1

The End!