Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014987.1 Corchorus capsularis cultivar CVL-1 contig15008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83042

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19003--19031
8
3.6
8
100
0
58
0
0
10
89
0.48
19420--19524
54
1.9
54
90
0
165
40
20
11
27
1.86
20257--20415
60
2.7
60
91
3
241
38
18
16
27
1.92
20317--20420
31
3.4
31
69
15
108
37
19
18
25
1.94
20448--20551
31
3.4
30
75
15
106
27
19
18
34
1.95
20482--20580
29
3.3
29
71
18
87
27
19
19
34
1.95
20451--20611
60
2.7
59
88
5
227
27
18
18
35
1.94
24974--25074
50
2.0
50
100
0
202
33
7
17
40
1.79
29024--29049
2
13.0
2
100
0
52
50
0
0
50
1.00
33975--34024
23
2.1
24
88
3
75
40
12
10
38
1.76
34101--34135
17
2.1
17
100
0
70
82
11
5
0
0.82
41959--42001
1
43.0
1
85
0
59
93
0
6
0
0.37
41959--42000
9
4.7
9
91
8
68
92
0
7
0
0.37
41959--42002
10
4.6
10
91
8
74
90
0
9
0
0.44
41959--42002
19
2.4
19
96
3
81
90
0
9
0
0.44
53113--53139
3
9.0
3
100
0
54
0
33
0
66
0.92
60883--60917
11
3.2
11
83
0
52
77
17
5
0
0.96
65909--65944
2
18.5
2
94
5
65
50
0
0
50
1.00
68749--68805
15
3.7
15
71
19
55
19
1
14
64
1.36
68740--68800
30
2.0
30
100
0
122
16
3
16
63
1.43
68864--68890
2
13.5
2
100
0
54
51
0
0
48
1.00
68941--68996
25
2.3
24
82
14
71
64
0
5
30
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70485--70534
25
2.0
26
92
4
84
52
4
6
38
1.45
70949--72346
351
4.0
351
87
1
1919
33
17
18
31
1.94
70949--72346
701
2.0
701
86
2
1975
33
17
18
31
1.94
74681--74978
149
2.0
149
97
0
569
26
18
20
34
1.96
80902--80947
21
2.2
21
100
0
92
32
17
10
39
1.84
81238--81286
3
16.3
3
86
0
71
69
0
2
28
1.00
81796--82449
331
1.9
334
82
6
811
38
9
13
39
1.76

Tables:   1

The End!