Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014988.1 Corchorus capsularis cultivar CVL-1 contig15009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107958

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155--182
2
14.0
2
100
0
56
50
0
0
50
1.00
1592--1652
29
2.1
30
90
3
97
29
3
21
45
1.67
6999--7029
16
1.9
16
100
0
62
38
19
12
29
1.89
10115--10147
17
1.9
17
93
0
57
36
15
3
45
1.61
10205--10419
109
2.0
108
89
3
328
46
8
10
33
1.70
11154--11212
31
1.9
31
85
0
82
45
3
16
33
1.64
11634--11689
26
2.2
25
87
3
76
37
1
3
57
1.27
32613--32665
27
2.0
27
96
0
97
45
32
7
15
1.74
32986--33056
29
2.4
29
79
6
90
15
21
18
45
1.86
41969--42018
22
2.2
23
92
7
93
8
24
18
50
1.73
50447--50473
6
4.5
6
100
0
54
0
18
0
81
0.69
51819--51888
22
3.1
23
78
10
74
37
15
11
35
1.84
51831--52060
22
10.6
22
73
14
142
35
13
9
41
1.77
51872--51956
23
3.7
23
85
1
109
37
12
7
42
1.71
51833--51956
45
2.8
46
84
6
148
37
13
8
39
1.76
51923--51995
38
1.9
38
85
0
101
35
12
8
43
1.72
52047--52122
22
3.5
22
74
0
71
34
10
14
40
1.80
52025--52122
44
2.2
43
83
7
117
34
11
13
40
1.80
52133--52297
31
5.5
30
68
16
108
35
18
19
27
1.95
52134--52296
60
2.7
60
90
1
256
35
18
19
26
1.95
52327--52492
31
5.5
30
70
18
139
25
20
21
32
1.98
52327--52488
60
2.7
60
95
0
279
24
20
21
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52504--52549
19
2.3
20
88
3
67
23
17
10
47
1.79
52651--52897
22
11.3
22
68
13
127
33
13
10
42
1.77
52627--52819
44
4.4
44
75
12
166
33
11
9
44
1.74
52627--52792
88
1.9
88
80
9
196
33
12
10
43
1.78
53068--53132
22
2.9
22
76
4
67
40
21
7
30
1.81
53122--53209
22
4.0
22
72
10
81
38
19
9
32
1.83
56171--56210
8
5.0
8
90
0
53
47
17
2
32
1.61
56178--56207
4
7.5
4
92
0
51
50
20
0
30
1.49
56178--56210
12
2.8
12
90
0
57
48
18
0
33
1.48
59856--59885
6
5.0
6
91
0
51
3
16
0
80
0.85
62049--62085
16
2.4
17
82
17
53
35
0
18
45
1.50
65778--65849
2
40.5
2
72
22
63
52
0
0
47
1.00
66104--66180
34
2.3
34
82
8
95
23
15
23
37
1.93
70040--70092
21
2.5
21
79
11
63
30
30
13
26
1.94
84152--84179
14
2.0
14
100
0
56
42
0
7
50
1.30
89691--89731
21
2.0
21
85
9
57
31
12
12
43
1.79
95434--95541
55
2.0
55
92
0
180
35
17
17
29
1.93

Tables:   1

The End!