Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001499.1 Corchorus capsularis cultivar CVL-1 contig01499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4201
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:1296 original size:12 final size:12

Alignment explanation


    Indices: 1263--1297  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       1253 CCTTCAAAGA

                     *  
       1263 ATATACATACAT
          1 ATATACATATAT

                        
       1275 ATATACATATAT
          1 ATATACATATAT

                 *     
       1287 ATATATATATA
          1 ATATACATATA

       1298 GATGTATATT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40


Consensus pattern (12 bp):   
ATATACATATAT

Found at i:2792 original size:20 final size:19

Alignment explanation


    Indices: 2767--2806  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2757 AGTGTTAATG

                               
       2767 GGTTTTTTTTTGAAGAAAT
          1 GGTTTTTTTTTGAAGAAAT

                               
       2786 GGTTTTTTTTTGAAGAAAT
          1 GGTTTTTTTTTGAAGAAAT

              
       2805 GG
          1 GG

       2807 GGGGCTTTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50


Consensus pattern (19 bp):   
GGTTTTTTTTTGAAGAAAT
Done.