Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014992.1 Corchorus capsularis cultivar CVL-1 contig15013, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2135
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28


Found at i:1082 original size:2 final size:2

Alignment explanation


    Indices: 1075--1112  Score: 58
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       1065 AATTGAAATT

                                                                   
       1075 GA GA GA GA CGA GA GA GA GA TGA GA GA GA GA GA GA GA GA
          1 GA GA GA GA -GA GA GA GA GA -GA GA GA GA GA GA GA GA GA

       1113 TTGTTGTCTC


Statistics
Matches: 34,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   2   30  0.88
   3    4  0.12

ACGTcount: A:0.47, C:0.03, G:0.47, T:0.03


Consensus pattern (2 bp):   
GA

Found at i:1091 original size:11 final size:10

Alignment explanation


    Indices: 1075--1112  Score: 58
    Period size: 11  Copynumber: 3.6  Consensus size: 10

       1065 AATTGAAATT

                       
       1075 GAGAGAGACGA
          1 GAGAGAGA-GA

                       
       1086 GAGAGAGATGA
          1 GAGAGAGA-GA

                      
       1097 GAGAGAGAGA
          1 GAGAGAGAGA

                  
       1107 GAGAGA
          1 GAGAGA

       1113 TTGTTGTCTC


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  10    8  0.31
  11   18  0.69

ACGTcount: A:0.47, C:0.03, G:0.47, T:0.03


Consensus pattern (10 bp):   
GAGAGAGAGA
Done.