genome.fa.s14995.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014995.1 Corchorus capsularis cultivar CVL-1 contig15016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140408

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036--1095	30	2.0	30	96	0	111	31	31	13	23	1.93
13355--13380	13	2.0	13	100	0	52	38	0	0	61	0.96
15099--15212	57	2.0	57	92	0	192	19	31	17	31	1.95
15664--15705	20	2.1	20	95	0	75	26	30	11	30	1.92
16789--16831	3	14.3	3	100	0	86	65	0	0	34	0.93
18749--18817	36	1.9	36	82	11	88	20	27	0	52	1.47
19143--19190	22	2.3	20	86	10	62	39	25	16	18	1.91
19110--19212	53	1.9	53	88	3	154	35	26	20	17	1.94
19162--19261	31	3.2	31	81	5	103	34	26	22	18	1.96
22232--22277	23	2.0	23	100	0	92	30	26	21	21	1.99
31479--31512	16	2.1	16	88	0	50	29	17	5	47	1.71
34376--34412	18	2.1	18	94	0	65	8	10	0	81	0.89
34415--34468	21	2.6	21	93	0	99	29	24	9	37	1.86
38565--38611	14	3.2	14	88	11	76	36	38	0	25	1.56
38559--38606	16	3.1	16	88	11	82	35	37	0	27	1.57
38904--38985	27	3.1	27	63	16	73	40	18	10	30	1.85
38921--39001	24	3.2	24	64	16	65	37	20	9	32	1.86
38904--39006	51	2.0	51	100	0	206	39	19	9	31	1.84
43654--43827	31	5.5	31	80	8	163	36	22	21	18	1.95
56174--56263	26	3.5	26	92	0	153	23	17	25	33	1.96
64735--64784	15	3.3	15	70	25	50	14	4	10	72	1.26
66466--66495	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78572--78627	25	2.3	26	79	17	66	57	0	1	41	1.09
78729--78775	24	2.0	24	83	8	60	44	0	2	53	1.12
78720--78780	29	2.1	30	87	3	88	44	1	3	50	1.28
92427--92499	38	1.9	38	97	0	137	31	23	17	27	1.97
92714--92747	16	2.1	16	100	0	68	52	17	11	17	1.73
93208--93238	12	2.6	12	94	0	53	48	6	3	41	1.45
93440--93466	2	13.5	2	100	0	54	51	0	0	48	1.00
94687--94734	22	2.3	20	86	10	62	39	25	16	18	1.91
94654--94756	53	1.9	53	90	0	161	35	27	20	16	1.94
94706--94830	31	4.0	31	86	0	133	33	24	20	21	1.97
96910--96948	2	19.5	2	100	0	78	48	0	0	51	1.00
101110--101158	24	2.0	24	88	7	73	32	28	10	28	1.90
104497--104574	39	2.0	39	94	0	138	29	25	6	38	1.81
104641--104693	27	2.0	27	88	0	79	20	7	15	56	1.63
106240--106267	13	2.2	13	100	0	56	39	0	7	53	1.28
106285--106346	24	2.4	26	78	15	74	33	32	0	33	1.58
106525--106573	24	2.0	24	100	0	98	51	8	8	32	1.61
106644--106696	24	2.2	24	96	0	97	52	7	5	33	1.53
107833--107879	2	25.5	2	79	16	57	51	2	0	46	1.13
107833--107877	15	2.8	17	83	13	67	51	2	0	46	1.13
107947--107980	17	2.0	17	100	0	68	35	0	35	29	1.58
109156--109413	126	2.1	125	94	2	446	31	15	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112190--112242	16	3.4	16	82	15	74	5	15	39	39	1.70
112198--112281	38	2.2	38	83	8	107	7	15	36	40	1.75
112198--112248	15	3.3	15	76	15	59	3	13	39	43	1.63
112198--112281	39	2.2	39	85	6	109	7	15	36	40	1.75
112523--112604	42	2.0	42	95	0	146	36	4	19	39	1.73
113148--113192	16	2.8	16	83	12	65	8	28	37	24	1.86
114912--114936	6	4.2	6	100	0	50	32	0	68	0	0.90
116642--116727	44	2.0	44	100	0	172	33	11	4	50	1.60
116911--116948	20	1.9	20	100	0	76	31	26	5	36	1.79
119145--119182	11	3.5	11	89	10	51	39	0	2	57	1.12
119629--119677	6	7.5	6	80	17	53	34	12	2	51	1.51
122324--122422	34	2.9	34	83	0	135	36	9	16	38	1.80
125396--125430	2	17.5	2	100	0	70	48	0	0	51	1.00
127229--127273	21	2.1	22	84	12	58	15	33	8	42	1.78
137988--138021	16	2.1	17	88	5	52	41	14	8	35	1.77

Tables:   1

The End!