genome.fa.s14996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014996.1 Corchorus capsularis cultivar CVL-1 contig15017, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76295

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4168--4223	28	2.0	28	100	0	112	50	21	3	25	1.65
12971--13006	3	12.0	3	100	0	72	0	66	33	0	0.92
15564--15588	11	2.3	11	100	0	50	0	24	0	76	0.80
24549--24589	19	2.2	19	90	0	64	12	21	24	41	1.87
24572--24679	28	4.2	28	75	20	117	14	24	33	27	1.94
24815--25444	26	24.3	26	82	7	664	19	25	27	28	1.98
24836--25456	50	12.0	50	87	6	662	19	25	27	28	1.99
24836--25456	76	8.0	78	83	8	695	19	25	27	28	1.99
24851--25677	50	16.0	54	80	13	387	21	24	28	26	1.99
25469--25661	98	2.0	98	94	0	341	26	22	29	22	1.99
25567--25677	27	4.1	27	92	0	186	22	22	31	23	1.98
25496--25634	71	2.0	71	92	0	233	25	23	29	22	1.99
25442--25670	125	1.8	125	92	0	386	26	21	29	22	1.99
25807--25930	29	4.3	29	85	2	171	19	25	28	26	1.99
25975--26069	29	3.3	29	90	0	154	23	16	30	29	1.96
25969--26112	58	2.5	56	81	7	162	19	21	28	30	1.98
26552--26631	28	2.8	29	77	9	92	20	15	23	41	1.89
26614--26651	20	1.9	20	94	0	67	10	13	36	39	1.79
26586--26729	48	3.0	48	92	2	245	17	13	28	40	1.88
26634--26727	28	3.6	28	68	21	96	17	13	26	42	1.86
26662--26699	20	1.9	20	94	0	67	10	15	34	39	1.82
26747--27116	58	6.4	57	86	4	429	17	21	33	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26747--27113	116	3.2	117	85	3	474	16	21	33	28	1.95
26784--27116	174	1.9	174	86	2	481	17	21	34	27	1.95
30184--30430	58	4.3	58	82	1	271	28	34	20	17	1.95
30185--30430	116	2.1	116	83	1	314	28	34	19	17	1.95
30452--30542	46	1.9	47	91	4	148	37	28	17	16	1.92
30512--30632	28	4.4	28	76	14	133	44	20	14	20	1.86
30972--31361	29	13.3	29	79	7	396	31	25	21	21	1.98
30972--31361	58	6.7	58	80	7	448	31	25	21	21	1.98
31492--31867	27	13.6	27	85	3	455	25	30	21	22	1.98
31492--31867	83	4.5	82	84	6	445	25	30	21	22	1.98
31499--31867	110	3.3	110	92	0	585	25	30	20	23	1.99
31877--31988	27	4.1	27	70	0	80	24	35	33	7	1.83
32008--32065	19	3.1	19	92	0	89	32	29	20	17	1.95
32313--32365	24	2.2	24	83	12	65	39	24	18	16	1.91
45089--45235	73	2.0	73	94	0	258	29	12	12	44	1.80
47994--48681	35	19.7	35	83	10	829	32	18	9	39	1.83
47994--48682	143	4.9	141	86	7	873	32	18	9	39	1.83
48528--48686	31	4.9	31	77	13	167	32	20	8	38	1.82
48530--48584	14	3.7	15	70	15	51	32	21	9	36	1.85
62430--62480	22	2.4	22	86	3	68	0	11	7	80	0.90
62761--62828	27	2.5	26	83	6	66	55	5	30	7	1.51
66724--66766	12	3.6	12	80	0	59	18	9	2	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67119--67173	20	2.8	20	86	8	76	52	23	7	16	1.68
67430--67487	29	2.0	29	93	0	98	34	18	10	36	1.85
67776--67852	30	2.5	31	77	12	79	31	14	16	37	1.89
68788--68814	7	3.9	7	100	0	54	11	0	0	88	0.50
73815--73843	15	1.9	15	100	0	58	93	6	0	0	0.36

Tables:   1

The End!