Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014997.1 Corchorus capsularis cultivar CVL-1 contig15018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34267

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--46
2
21.5
2
100
0
86
48
0
0
51
1.00
289--356
29
2.3
29
87
5
91
26
25
11
36
1.90
1051--1130
29
2.7
29
86
7
108
43
12
18
25
1.85
5236--5334
31
3.2
31
82
0
117
20
21
25
33
1.97
5284--5386
53
1.9
53
84
0
134
19
18
25
36
1.94
6407--6464
29
2.0
29
86
0
80
44
13
17
24
1.85
15373--15408
12
3.2
12
85
14
51
13
16
0
69
1.19
18895--18946
25
2.2
24
86
6
70
48
5
23
23
1.72
19274--19311
2
19.0
2
100
0
76
50
0
0
50
1.00
23376--23429
28
1.9
28
85
7
74
40
14
22
22
1.90
32646--32705
30
2.0
30
96
0
111
30
28
25
16
1.97
33390--33483
31
3.0
31
100
0
188
35
19
15
29
1.93

Tables:   1

The End!