Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014998.1 Corchorus capsularis cultivar CVL-1 contig15019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18875
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1896 original size:16 final size:16

Alignment explanation


    Indices: 1875--1907  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1865 GATTGGATGT

                            
       1875 GATAATGAGTAAAATC
          1 GATAATGAGTAAAATC

                            
       1891 GATAATGAGTAAAATC
          1 GATAATGAGTAAAATC

             
       1907 G
          1 G

       1908 CATACTTAAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.48, C:0.06, G:0.21, T:0.24


Consensus pattern (16 bp):   
GATAATGAGTAAAATC

Found at i:18012 original size:16 final size:16

Alignment explanation


    Indices: 17986--18028  Score: 52
    Period size: 16  Copynumber: 2.8  Consensus size: 16

      17976 TTCATGTCTT

                            
      17986 TAAAT-ATTAAAAATG
          1 TAAATAATTAAAAATG

              *          * *
      18001 TATATAATTAAAATTT
          1 TAAATAATTAAAAATG

                        
      18017 TAAATAATTAAA
          1 TAAATAATTAAA

      18029 TTCAAGCAAA


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  15    4  0.17
  16   19  0.83

ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40


Consensus pattern (16 bp):   
TAAATAATTAAAAATG
Done.