Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000150.1 Corchorus capsularis cultivar CVL-1 contig00150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3488
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:428 original size:19 final size:21

Alignment explanation


    Indices: 385--431  Score: 62
    Period size: 19  Copynumber: 2.3  Consensus size: 21

        375 GAACATACAT

                                  
        385 AATGAATCTAATTGAATTATTC
          1 AATGAATCTAATTG-ATTATTC

                             *   
        407 AATGAA-CTAATTG-TTGTTC
          1 AATGAATCTAATTGATTATTC

                  
        426 AATGAA
          1 AATGAA

        432 GAAAAGTTTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  19   11  0.46
  21    7  0.29
  22    6  0.25

ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38


Consensus pattern (21 bp):   
AATGAATCTAATTGATTATTC
Done.