Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015001.1 Corchorus capsularis cultivar CVL-1 contig15022, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26343
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:2108 original size:354 final size:346
Alignment explanation
Indices: 1536--2231 Score: 907
Period size: 354 Copynumber: 2.0 Consensus size: 346
1526 TGCCACTTCA
* * *
1536 TGCTCAGCTACCTTGTCAAAAAGTACCCCTTCCCTCCTTAGCTTAGCTATTTCTTCAATTTTGTC
1 TGCTCAGCTACCTTGTCAAAAAGTACCCCTTCACTCCTTAGATTAGCTATTTCTTCAATTTTGCC
* * ** *
1601 TCCAACTTGATGGCCAAACAAGTAGTAATTCTGGGAATTGTTGCCTCCAAAACACAACTCCTTAA
66 TCCAACTTGATGACCAAACAAGTAGCAATTCTGGGAAAAGTAGCCTCCAAAACACAACTCCTTAA
* * *
1666 TTTGATCAGGACCATGGTTGACCAATTCCTCAGCTTCTCCGATCACGGTATCTGCACTTCCAAGC
131 TTTCATCAGGACCATCGTTGACCAATTCCTCAACTTCTCCGATCACGGTATCTGCACTTCCAAGC
* * * *
1731 TAGCCTTGAACTTGACGGAGTGGCTTCAATCC-TTGTATTTTGGCATGATTAACCTCGTCCTCTT
196 CAGCCTTGAACTTGACGGAGTGGCTTCAATCCTTTGTATTTTGGCACGATCAACCTCAT--TCTT
* * *
1795 T-A-TCATCCCTTAAATC-CTTTAATTTCTGCAATTCATCTCCAAGAGCTTTAAGTTTCTTCTCA
259 TAAGTCATCCCTTAAATCTC-TTAATCTCTGCAATTCATCTCCAAGAGCCTTAAGATTCTTCTCA
1857 AGATTACGTGTATAGTTCTCGTCG
323 AGATTACGTGTATAGTTCTCGTCG
*
1881 TGCTCAGCTACCTTGTTAAAAAGTACCCCTTCACTCCTTAGATTAGCTATTTCTTCAATTTTGCC
1 TGCTCAGCTACCTTGTCAAAAAGTACCCCTTCACTCCTTAGATTAGCTATTTCTTCAATTTTGCC
* * * *
1946 TCCAACTTGTTTACCAAACTTGTAGCTGGACTTGCAATTCTTGGAAAAGTAGCCTCCAAAACACA
66 TCCAACTTGATGACCAAAC---AAG-T--A---GCAATTCTGGGAAAAGTAGCCTCCAAAACACA
* * * * *
2011 GCAT-CTTAATTTCATCAGGACCATCGTTGACGAATTTCTGAACTTCTCCGATCATGGTATCTGC
122 AC-TCCTTAATTTCATCAGGACCATCGTTGACCAATTCCTCAACTTCTCCGATCACGGTATCTGC
* * * **
2075 CCTTCCAAGCCAGCTTTGTACTTGATTGAGTGGCTTCAATCCTTGTTGTATTTTGGCACGATCAA
186 ACTTCCAAGCCAGCCTTGAACTTGACGGAGTGGCTTCAATCC-T-TTGTATTTTGGCACGATCAA
2140 CCTCATTCTTTAAGTCATCCCTTAAATCTCTTAATCTCTGCAATTCATCTCCAAGAGCCTTAAGA
249 CCTCATTCTTTAAGTCATCCCTTAAATCTCTTAATCTCTGCAATTCATCTCCAAGAGCCTTAAGA
* *
2205 TTCTTCTCGAGCTTACGTGTATAGTTC
314 TTCTTCTCAAGATTACGTGTATAGTTC
2232 ACTCTCTTAG
Statistics
Matches: 300, Mismatches: 35, Indels: 20
0.85 0.10 0.06
Matches are distributed among these distances:
345 77 0.26
348 2 0.01
349 1 0.00
351 1 0.00
354 117 0.39
355 6 0.02
356 1 0.00
357 94 0.31
358 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (346 bp):
TGCTCAGCTACCTTGTCAAAAAGTACCCCTTCACTCCTTAGATTAGCTATTTCTTCAATTTTGCC
TCCAACTTGATGACCAAACAAGTAGCAATTCTGGGAAAAGTAGCCTCCAAAACACAACTCCTTAA
TTTCATCAGGACCATCGTTGACCAATTCCTCAACTTCTCCGATCACGGTATCTGCACTTCCAAGC
CAGCCTTGAACTTGACGGAGTGGCTTCAATCCTTTGTATTTTGGCACGATCAACCTCATTCTTTA
AGTCATCCCTTAAATCTCTTAATCTCTGCAATTCATCTCCAAGAGCCTTAAGATTCTTCTCAAGA
TTACGTGTATAGTTCTCGTCG
Found at i:2860 original size:12 final size:12
Alignment explanation
Indices: 2828--2866 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
2818 ATGGAATTAA
2828 ATATCCGTCG--
1 ATATCCGTCGAT
2838 ATA-CC-TCGAT
1 ATATCCGTCGAT
2848 ATATCCGTCGAT
1 ATATCCGTCGAT
2860 ATATCCG
1 ATATCCG
2867 ATATTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 3 0.12
9 2 0.08
10 6 0.24
11 2 0.08
12 12 0.48
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (12 bp):
ATATCCGTCGAT
Found at i:12518 original size:22 final size:22
Alignment explanation
Indices: 12493--12536 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
12483 ACAGCAAAAT
12493 ATCCTGCCTAACTTGTAAATTG
1 ATCCTGCCTAACTTGTAAATTG
*
12515 ATCCTGCCTAACTTGTTAATTG
1 ATCCTGCCTAACTTGTAAATTG
12537 GATTCACTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (22 bp):
ATCCTGCCTAACTTGTAAATTG
Found at i:16630 original size:3 final size:3
Alignment explanation
Indices: 16622--16655 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
16612 CACATCAAGA
* *
16622 ATC ATC ATC ATC ATC ATC TTC ATC ATC TTC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
16656 AGAAGCTCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (3 bp):
ATC
Found at i:19392 original size:74 final size:74
Alignment explanation
Indices: 19266--19403 Score: 188
Period size: 74 Copynumber: 1.9 Consensus size: 74
19256 CTTCATGGTT
* * *
19266 GACTTGGTGGATGCGATCTTCAATCAGCCTCAATTTGCAGGTTTCAATTTTCTCAAATAGAAGAG
1 GACTTGGTGGATGCGATCTTCAATCAGCCTCAATTTGAAGGTTTCAAGTTTCTAAAATAGAAGAG
19331 AGTGGACCA
66 AGTGGACCA
* * * * *
19340 GACTTGGTGGATGTGATCTTTAATCATCCTCAATTT-AAGGGTTTCTAGTTTCTAAAATGGAAGA
1 GACTTGGTGGATGCGATCTTCAATCAGCCTCAATTTGAA-GGTTTCAAGTTTCTAAAATAGAAGA
19404 CTGTGGATAG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 1 0.02
74 54 0.98
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (74 bp):
GACTTGGTGGATGCGATCTTCAATCAGCCTCAATTTGAAGGTTTCAAGTTTCTAAAATAGAAGAG
AGTGGACCA
Found at i:19508 original size:20 final size:20
Alignment explanation
Indices: 19472--19511 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
19462 ATGTTTTGTT
**
19472 AGATGTTTGTCTTTTGAAAA
1 AGATGTTTGTCCCTTGAAAA
19492 AGATGTTTGTCCCTTGAAAA
1 AGATGTTTGTCCCTTGAAAA
19512 TATTTTGAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (20 bp):
AGATGTTTGTCCCTTGAAAA
Found at i:20666 original size:429 final size:428
Alignment explanation
Indices: 19805--20875 Score: 1124
Period size: 429 Copynumber: 2.5 Consensus size: 428
19795 TGAATCTTTG
* * * *
19805 TTAATCGGACATCTGGATTAAAAATAATATGATATTAAATAGA-TTGTCAATCGAAATCACAAAA
1 TTAATCGGACATGTGGATCAAAAATTATATGATATTAAATAGACTAG-CAATCGAAA-CACAAAA
* * * * * *
19869 TTTCA-AAAGCATTTTTTAGAATTGAAATATAAAAATTAGCTTTTAAATCTTTCATGAAAGTTGT
64 TTT-AGGAAGCATTTTTTTGAATTAAAATATAAAAATTTGCTTTTGAATCTTTCATGAAAGATGT
* * ** *
19933 AGATCATAAAATTACCTTTTAATAGACATCTGAATTATTTTAATTGGACAAA-AATAACAAAGAA
128 AGATCATGAAATTACCTTTTAATAGACA-CTGAATCAACTTAATCGGACAAATAA-AACAAAG--
* *
19997 AATTTTTAAAAAATGAAGTGTTAAATCAAGTAAGATAGAATTTGTAAAGGACTAAGTAACATAAA
189 -A---TTAAAAAA--AA--G-TAAAGCAAGTAAGATAGAATTTGTAAAGGACTAAATAACATAAA
* * *
20062 ATAGAAAAGTATGAGAGTGATTTGATAACTAATTCAAATAAGAAAATATTTGTTAATAGAGATCT
245 ATAGAAAAGTATGAGAGTCATTTCATAACTAATCCAAATAAGAAAATATTTGTTAATAGAGATCT
* * * *
20127 TGAAACATAAAAATTTCCTTTTGAACCCTTCATGAAACTCATAGATCAAATTAACTTTTGGGTTC
310 TGAAACATAAAAATTCCCTTTTGAACCCTTAATGAAACTCATAGATCAAATTAACTTTCGGGTCC
* * * * * *
20192 TTCATGAAAGTCGTAGATTATACAGTAACCTTTTTAATCGACACTTGAATAACT
375 TTCATGAAAGTCATAAATCATACAATAACCTTTTTAATCGACACTTCAACAACT
* * * * *
20246 TTAATTGGACATGTGGATCGAAAATTATATGGTATTAAATAGACTAGCAATCGAAACGACCACAT
1 TTAATCGGACATGTGGATCAAAAATTATATGATATTAAATAGACTAGCAATCGAAAC-ACAAAAT
* *
20311 TTAGGAAGCATTTTTTTGAATTAAAACATAAAAATTTGCTTTTGAATCTTTCATGAAAGATGTAC
65 TTAGGAAGCATTTTTTTGAATTAAAATATAAAAATTTGCTTTTGAATCTTTCATGAAAGATGTAG
* *
20376 ATTATGAAATTACCTTTTAATAGACACATGAATCAACTTAATCGGACAAATAGAACAAAGATTAA
130 ATCATGAAATTACCTTTTAATAGACAC-TGAATCAACTTAATCGGACAAATAAAACAAAGATTAA
* * ** * *
20441 AAAAAA-TAAAGCGATTAAGATAGAATTTGTAAAGGACTAAATAGTATAAAGTATAAAAGTATGA
194 AAAAAAGTAAAGCAAGTAAGATAGAATTTGTAAAGGACTAAATAACATAAAATAGAAAAGTATGA
* * *
20505 GGGTCATTTCATCAA-TAATCCAAATAAGAAAATGTTTGTTAATGGAGATCTTGAAACATAAAAA
259 GAGTCATTTCAT-AACTAATCCAAATAAGAAAATATTTGTTAATAGAGATCTTGAAACATAAAAA
* * *
20569 TTCCCTTTTGAACCCTTAACT-AAACTCGTAGATCAAATTTAGCTTTCGGGTCCTTCATGGAAGT
323 TTCCCTTTTGAACCCTTAA-TGAAACTCATAGATCAAA-TTAACTTTCGGGTCCTTCATGAAAGT
*
20633 CATAAATCATGCAATAACC-TTTTAA-CTGACACTTCAACAACT
386 CATAAATCATACAATAACCTTTTTAATC-GACACTTCAACAACT
* * * ** ** * *
20675 TCAATCGGATATGTGGA-CAAAAAACTATACAATATTAAATTA-ACCGGCAACCAAAACCACAAA
1 TTAATCGGACATGTGGATC-AAAAATTATATGATATTAAA-TAGACTAGCAATCGAAA-CACAAA
* * * * * * *
20738 ATTTCGGAAGCATTTTTTTTAATCAAAATATTAAAA-TTGACTTTTGAGT-TCTTAATTAAA-AT
63 ATTTAGGAAGCATTTTTTTGAATTAAAATATAAAAATTTG-CTTTTGAATCT-TTCATGAAAGA-
* * * * *
20800 TGTAGGTCATGAAATTACCTTTTAATAGGCACTTGAATCACCTTAATCGGACAAATAAAAAAAAT
125 TGTAGATCATGAAATTACCTTTTAATAGACAC-TGAATCAACTTAATCGGACAAATAAAACAAAG
20865 ATATAAAAAAA
189 AT-TAAAAAAA
20876 GGCAGCGCGT
Statistics
Matches: 531, Mismatches: 83, Indels: 43
0.81 0.13 0.07
Matches are distributed among these distances:
428 7 0.01
429 302 0.57
430 50 0.09
433 2 0.00
435 8 0.02
438 1 0.00
440 3 0.01
441 155 0.29
442 3 0.01
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (428 bp):
TTAATCGGACATGTGGATCAAAAATTATATGATATTAAATAGACTAGCAATCGAAACACAAAATT
TAGGAAGCATTTTTTTGAATTAAAATATAAAAATTTGCTTTTGAATCTTTCATGAAAGATGTAGA
TCATGAAATTACCTTTTAATAGACACTGAATCAACTTAATCGGACAAATAAAACAAAGATTAAAA
AAAAGTAAAGCAAGTAAGATAGAATTTGTAAAGGACTAAATAACATAAAATAGAAAAGTATGAGA
GTCATTTCATAACTAATCCAAATAAGAAAATATTTGTTAATAGAGATCTTGAAACATAAAAATTC
CCTTTTGAACCCTTAATGAAACTCATAGATCAAATTAACTTTCGGGTCCTTCATGAAAGTCATAA
ATCATACAATAACCTTTTTAATCGACACTTCAACAACT
Found at i:21168 original size:9 final size:9
Alignment explanation
Indices: 21154--21195 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
21144 CACTTTCCCC
21154 TTTTATTGT
1 TTTTATTGT
21163 TTTTATT-T
1 TTTTATTGT
21171 TATTT-TTGT
1 T-TTTATTGT
21180 TTTTATTGT
1 TTTTATTGT
21189 TTCTTAT
1 TT-TTAT
21196 AATATCCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.24
9 18 0.62
10 4 0.14
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (9 bp):
TTTTATTGT
Found at i:25330 original size:19 final size:19
Alignment explanation
Indices: 25293--25330 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25283 GCGTTGGTAA
*
25293 TTGCACGTGCTTAGGGGAG
1 TTGCACGTGCTTAGAGGAG
25312 TTGCACGTG-TTCAGAGGAG
1 TTGCACGTGCTT-AGAGGAG
25331 CATTCAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.18, C:0.16, G:0.39, T:0.26
Consensus pattern (19 bp):
TTGCACGTGCTTAGAGGAG
Found at i:25444 original size:119 final size:119
Alignment explanation
Indices: 25231--25720 Score: 739
Period size: 119 Copynumber: 4.1 Consensus size: 119
25221 ATTCGGTGCT
*
25231 AGCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCGTTGGTAATTG
1 AGCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCATTGGTAATTG
25296 CACGTGCTTAGGGGAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTA
66 CACGTGCTTAGGGGAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTA
* * ** * *
25350 AGCATTTTTCACTCGCGCGGTTGGCACTCTTCATTGGGCACTCTTCTTTCGCGCATTGGTGATTG
1 AGCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCATTGGTAATTG
* * * * *
25415 CACGTGCTTGGGGGAGTTGCACGTATTCAGGGGAGCATCCGGTGCTCTTCATTA
66 CACGTGCTTAGGGGAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTA
* * *
25469 AGCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTTTTCTTTTGCGCGTTGGTAATTG
1 AGCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCATTGGTAATTG
* *
25534 CACGTGCTTAGGGAAGTTGCACGTGTTCAGAGGAGCATTTAGTGCTCTTCATTA
66 CACGTGCTTAGGGGAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTA
* ** * *
25588 AGCATTCTTCACTCGCGCGGTTGGCACTCTTCATTGGGCACTCTTCTTTCGCGCATTGGTGATTG
1 AGCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCATTGGTAATTG
* * *
25653 CACGTGCTTGGGGGAGTTGCACGTGTTCAGGGGAGCA-TCTGGTGCTCTTCATTA
66 CACGTGCTTAGGGGAGTTGCACGTGTTCAGAGGAGCATTC-AGTGCTCTTCATTA
25707 AGCATTCTTCACTC
1 AGCATTCTTCACTC
25721 ACGTGGTTAG
Statistics
Matches: 329, Mismatches: 41, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
118 1 0.00
119 328 1.00
ACGTcount: A:0.17, C:0.24, G:0.27, T:0.33
Consensus pattern (119 bp):
AGCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCATTGGTAATTG
CACGTGCTTAGGGGAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTA
Found at i:25585 original size:238 final size:238
Alignment explanation
Indices: 25175--25720 Score: 955
Period size: 238 Copynumber: 2.3 Consensus size: 238
25165 CATGAATAAG
* *
25175 TTGGTGATTGCACGTGCTTGAGGGAGTTGCACGTGTTCAGGGGAGCATTCGGTG-----C--T-A
1 TTGGTGATTGCACGTGCTTGGGGGAGTTGCACGTGTTCAGGGGAGCATCCGGTGCTCTTCATTAA
25232 GCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCGTTGGTAATTGC
66 GCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCGTTGGTAATTGC
* *
25297 ACGTGCTTAGGGGAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTAAGCATTTTTCAC
131 ACGTGCTTAGGGAAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTAAGCATTCTTCAC
25362 TCGCGCGGTTGGCACTCTTCATTGGGCACTCTTCTTTCGCGCA
196 TCGCGCGGTTGGCACTCTTCATTGGGCACTCTTCTTTCGCGCA
*
25405 TTGGTGATTGCACGTGCTTGGGGGAGTTGCACGTATTCAGGGGAGCATCCGGTGCTCTTCATTAA
1 TTGGTGATTGCACGTGCTTGGGGGAGTTGCACGTGTTCAGGGGAGCATCCGGTGCTCTTCATTAA
* *
25470 GCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTTTTCTTTTGCGCGTTGGTAATTGC
66 GCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCGTTGGTAATTGC
*
25535 ACGTGCTTAGGGAAGTTGCACGTGTTCAGAGGAGCATTTAGTGCTCTTCATTAAGCATTCTTCAC
131 ACGTGCTTAGGGAAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTAAGCATTCTTCAC
25600 TCGCGCGGTTGGCACTCTTCATTGGGCACTCTTCTTTCGCGCA
196 TCGCGCGGTTGGCACTCTTCATTGGGCACTCTTCTTTCGCGCA
*
25643 TTGGTGATTGCACGTGCTTGGGGGAGTTGCACGTGTTCAGGGGAGCATCTGGTGCTCTTCATTAA
1 TTGGTGATTGCACGTGCTTGGGGGAGTTGCACGTGTTCAGGGGAGCATCCGGTGCTCTTCATTAA
25708 GCATTCTTCACTC
66 GCATTCTTCACTC
25721 ACGTGGTTAG
Statistics
Matches: 298, Mismatches: 10, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
230 51 0.17
235 1 0.00
237 1 0.00
238 245 0.82
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.32
Consensus pattern (238 bp):
TTGGTGATTGCACGTGCTTGGGGGAGTTGCACGTGTTCAGGGGAGCATCCGGTGCTCTTCATTAA
GCATTCTTCACTCGCGCGGTCGGCACTCTAAATTGAGCACTCTTCTTTCGCGCGTTGGTAATTGC
ACGTGCTTAGGGAAGTTGCACGTGTTCAGAGGAGCATTCAGTGCTCTTCATTAAGCATTCTTCAC
TCGCGCGGTTGGCACTCTTCATTGGGCACTCTTCTTTCGCGCA
Found at i:25685 original size:19 final size:19
Alignment explanation
Indices: 25650--25687 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25640 GCATTGGTGA
*
25650 TTGCACGTGCTTGGGGGAG
1 TTGCACGTGCTTAGGGGAG
25669 TTGCACGTG-TTCAGGGGAG
1 TTGCACGTGCTT-AGGGGAG
25688 CATCTGGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.13, C:0.16, G:0.45, T:0.26
Consensus pattern (19 bp):
TTGCACGTGCTTAGGGGAG
Done.