Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015002.1 Corchorus capsularis cultivar CVL-1 contig15023, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102573

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1077--1220
75
1.9
75
91
5
238
33
15
6
44
1.72
2414--2459
24
1.9
24
95
0
83
6
28
23
41
1.79
5895--5934
6
6.7
6
94
0
71
0
17
0
82
0.67
9048--9084
6
5.4
7
90
9
51
0
0
13
86
0.57
9047--9084
13
2.8
14
84
8
60
0
0
15
84
0.63
13021--13059
20
2.0
20
89
0
60
74
5
12
7
1.20
14717--14778
29
2.1
29
82
11
74
22
20
11
45
1.83
14838--14900
32
2.0
32
87
0
90
30
26
23
19
1.98
14974--15048
30
2.6
29
83
6
98
40
16
25
18
1.91
22439--22488
1
50.0
1
95
0
91
98
0
0
2
0.14
27278--27331
26
2.1
26
100
0
108
50
11
3
35
1.56
33258--33301
16
2.7
16
79
13
54
77
0
15
6
0.97
43571--43650
32
2.6
31
90
7
121
61
8
8
21
1.52
49340--49388
17
2.9
16
85
8
62
34
22
20
22
1.97
57293--57322
15
2.0
15
100
0
60
33
13
13
40
1.83
69954--69978
12
2.1
12
100
0
50
68
8
0
24
1.16
72150--72429
105
2.7
105
90
0
434
15
25
13
45
1.82
72347--72542
84
2.3
84
90
3
297
15
22
13
48
1.79
73341--73429
44
2.0
44
100
0
178
58
13
13
14
1.64
76337--76558
115
2.0
111
88
4
329
24
18
21
36
1.95
79454--79494
21
1.9
22
90
5
66
14
41
4
39
1.67
79847--79896
22
2.5
20
87
9
66
36
26
18
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79868--79965
31
3.2
31
82
1
117
31
27
21
19
1.97
81650--82103
227
2.0
227
100
0
908
29
19
19
31
1.97
84786--84846
21
2.9
21
80
0
68
36
9
11
42
1.74
89766--90041
150
1.8
150
85
3
385
17
35
9
38
1.81
97335--97393
30
2.1
27
84
9
73
13
13
15
57
1.65

Tables:   1

The End!