Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015004.1 Corchorus capsularis cultivar CVL-1 contig15025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45496

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
567--613
4
11.8
4
100
0
94
51
23
0
25
1.49
706--733
2
14.0
2
100
0
56
50
0
0
50
1.00
6612--6636
7
3.6
7
100
0
50
88
0
12
0
0.53
16272--16341
29
2.3
31
85
4
99
31
12
27
28
1.93
27375--27415
21
2.0
21
90
0
64
21
14
0
63
1.30
37554--37589
17
2.1
17
100
0
72
41
5
22
30
1.76
38014--38049
5
7.2
5
93
0
63
2
0
58
38
1.13
40054--40093
20
2.0
20
100
0
80
35
5
0
60
1.19
43190--43237
24
2.0
25
83
4
62
41
6
8
43
1.60
44301--44380
29
2.7
30
80
3
90
28
17
12
41
1.86
44502--44583
31
2.7
31
98
1
157
42
9
15
31
1.80
44492--44583
31
3.1
30
92
6
152
41
10
15
32
1.82
45024--45289
134
2.0
133
85
3
365
36
8
3
51
1.49
45350--45412
30
2.1
30
94
5
110
33
15
11
39
1.83

Tables:   1

The End!