Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015005.1 Corchorus capsularis cultivar CVL-1 contig15026, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27850

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1876--1986
56
2.0
56
94
1
195
41
14
3
40
1.63
3527--3655
67
1.9
67
91
0
213
31
19
21
27
1.97
7292--7316
7
3.6
7
100
0
50
32
28
0
40
1.57
8980--9033
2
27.5
2
89
10
85
46
1
0
51
1.11
8980--9033
28
1.9
28
96
0
99
46
1
0
51
1.11
11443--11506
29
2.2
30
88
5
103
34
7
15
42
1.76
11450--11508
29
2.0
29
96
0
109
28
8
18
44
1.79
12188--12225
15
2.4
17
82
13
53
2
5
18
73
1.14
12190--12224
16
2.2
16
90
5
54
2
5
17
74
1.14
15572--15610
20
2.0
20
100
0
78
33
5
15
46
1.68
15621--15653
15
2.2
15
100
0
66
27
6
33
33
1.81
16221--16348
39
3.2
39
89
3
193
21
14
17
46
1.83
17788--17829
19
2.3
18
84
8
57
35
2
0
61
1.09
17852--17933
39
2.1
40
97
2
157
35
2
9
52
1.48
20374--20399
12
2.2
12
100
0
52
38
23
7
30
1.83
21724--22517
337
2.4
331
78
7
850
38
15
12
33
1.85
23481--26138
925
2.8
926
89
3
3785
36
15
14
32
1.89
26302--27157
331
2.6
330
80
4
853
37
13
14
34
1.86

Tables:   1

The End!