Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015011.1 Corchorus capsularis cultivar CVL-1 contig15032, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7519
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32


Found at i:6053 original size:31 final size:31

Alignment explanation


    Indices: 6018--6189  Score: 209
    Period size: 31  Copynumber: 5.5  Consensus size: 31

       6008 TCCTTTTATG

                    *  *      *            
       6018 CACGTGGCATGTCACGTGCCACTTTTTGGTA
          1 CACGTGGCGTGACACGTGTCACTTTTTGGTA

                   *      *                
       6049 CACGTGGTGTGACATGTGTCACTTTTTGGTA
          1 CACGTGGCGTGACACGTGTCACTTTTTGGTA

                          *                
       6080 CACGTGGCGTGACATGTGTCACTTTTTGGTA
          1 CACGTGGCGTGACACGTGTCACTTTTTGGTA

                          *    *       *   
       6111 CACGTGGCGTGACATGTGTTACTTTTTTGTA
          1 CACGTGGCGTGACACGTGTCACTTTTTGGTA

              *        *   *     *         
       6142 CATGTGGCGTGCCACATGTCAGTTTTTGGTA
          1 CACGTGGCGTGACACGTGTCACTTTTTGGTA

                    *  *     
       6173 CACGTGGCATGCCACGT
          1 CACGTGGCGTGACACGT

       6190 CAGACACCGT


Statistics
Matches: 123,  Mismatches: 18, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  31  123  1.00

ACGTcount: A:0.16, C:0.21, G:0.28, T:0.35


Consensus pattern (31 bp):   
CACGTGGCGTGACACGTGTCACTTTTTGGTA

Done.