Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015014.1 Corchorus capsularis cultivar CVL-1 contig15035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20957

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
467--554
33
2.7
33
83
3
106
12
30
38
18
1.88
1544--1613
16
4.5
15
75
18
63
40
40
14
5
1.69
1544--1613
15
4.5
16
78
8
65
40
40
14
5
1.69
4153--4189
19
1.9
20
88
5
58
32
8
2
56
1.43
4231--4299
34
2.0
34
97
0
129
33
11
18
36
1.87
6476--6524
1
49.0
1
79
0
53
89
0
6
4
0.57
12109--12146
20
1.9
20
88
0
58
28
2
2
65
1.19
12739--12783
23
2.0
23
90
0
72
40
2
15
42
1.59
12834--12867
15
2.3
15
94
0
59
32
5
0
61
1.20
15455--15484
2
15.0
2
100
0
60
50
0
0
50
1.00
20390--20418
1
29.0
1
100
0
58
0
0
0
100
0.00

Tables:   1

The End!