Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015016.1 Corchorus capsularis cultivar CVL-1 contig15037, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58804

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--66
2
20.0
2
100
0
80
50
0
0
50
1.00
8466--8495
1
30.0
1
93
0
51
3
0
0
96
0.21
21508--21549
20
2.1
20
95
0
75
23
19
4
52
1.65
26993--27030
20
1.9
20
88
0
58
34
13
13
39
1.83
28816--28910
31
3.1
31
77
7
79
30
25
6
37
1.81
28839--28913
32
2.4
32
81
2
89
32
25
6
36
1.82
31463--31487
8
3.1
8
100
0
50
0
12
24
64
1.27
32471--32522
26
2.0
26
85
7
70
13
9
26
50
1.72
35651--35682
4
8.0
4
100
0
64
0
25
0
75
0.81
39882--39916
2
18.0
2
94
5
63
51
0
0
48
1.00
40517--40575
14
4.1
14
75
16
59
44
15
0
40
1.46
40511--40573
24
2.7
23
83
9
83
42
15
0
41
1.47
40854--40883
15
1.9
16
93
6
53
43
0
0
56
0.99
41142--44557
331
10.5
329
75
10
2496
33
13
15
37
1.86
41398--43229
987
1.9
981
82
6
2306
34
13
14
37
1.86
47593--47661
33
2.1
33
89
2
104
26
27
20
26
1.99
48859--48904
24
1.9
24
90
0
74
19
34
19
26
1.96
53256--53286
16
2.0
16
93
6
55
29
6
6
58
1.48
57687--58150
126
3.7
126
86
2
578
31
14
15
38
1.87
57687--58150
249
1.9
252
85
5
663
31
14
15
38
1.87

Tables:   1

The End!