Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015017.1 Corchorus capsularis cultivar CVL-1 contig15038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20861

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
732--1753
211
4.8
214
91
2
1533
39
15
17
28
1.90
732--1766
427
2.4
423
89
3
1574
39
15
17
28
1.90
5987--6049
33
1.9
33
96
0
117
41
1
28
28
1.65
8362--8404
5
8.4
5
82
14
52
41
13
2
41
1.57
8353--8397
23
2.0
21
87
8
63
42
11
2
44
1.52
8354--8402
26
1.9
25
91
4
80
42
12
2
42
1.53
10351--10419
29
2.3
30
83
11
81
42
17
24
15
1.88
11121--11165
22
2.0
22
95
0
81
24
20
28
26
1.99
16288--16698
150
2.8
148
92
3
677
48
22
6
22
1.72
19741--20107
184
2.0
184
96
0
680
29
24
14
31
1.94
20508--20569
27
2.3
26
86
13
90
19
22
17
40
1.91
20515--20579
27
2.4
26
85
12
87
20
23
13
43
1.87

Tables:   1

The End!