Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015021.1 Corchorus capsularis cultivar CVL-1 contig15042, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6230
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33


Found at i:3118 original size:11 final size:11

Alignment explanation


    Indices: 3102--3126  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       3092 TTGTGTACAC

                       
       3102 TTTCTTTCTTT
          1 TTTCTTTCTTT

                       
       3113 TTTCTTTCTTT
          1 TTTCTTTCTTT

               
       3124 TTT
          1 TTT

       3127 TTTTTAGTTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (11 bp):   
TTTCTTTCTTT

Found at i:3130 original size:15 final size:15

Alignment explanation


    Indices: 3101--3129  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3091 TTTGTGTACA

                           
       3101 CTTTCTTTCTTTTTT
          1 CTTTCTTTCTTTTTT

                           
       3116 CTTTCTTT-TTTTTT
          1 CTTTCTTTCTTTTTT

       3130 TTAGTTGGTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (15 bp):   
CTTTCTTTCTTTTTT
Done.