genome.fa.s15027.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015027.1 Corchorus capsularis cultivar CVL-1 contig15048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28468

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4590--4617	2	14.0	2	100	0	56	50	0	0	50	1.00
4862--4920	31	1.9	31	89	0	91	33	10	27	28	1.89
6324--6354	2	15.5	2	100	0	62	48	0	0	51	1.00
9168--9211	20	2.2	20	91	0	70	50	22	2	25	1.61
14472--14503	12	2.4	14	90	10	50	46	3	9	40	1.52
15033--15122	45	2.0	45	93	0	153	33	18	23	24	1.97
16183--16513	166	2.0	167	86	2	470	29	14	16	38	1.89
17776--17819	17	2.5	18	96	3	81	13	6	18	61	1.54
17794--18035	128	1.9	130	96	1	452	23	11	18	45	1.83
20727--20938	82	2.5	82	83	3	264	30	16	10	42	1.81
22656--22849	84	2.3	84	84	1	257	28	15	13	42	1.85
23252--23292	15	2.8	15	85	10	50	36	4	2	56	1.34
25356--25410	22	2.5	22	90	0	83	41	12	10	34	1.78
25356--25430	22	3.5	22	87	1	80	44	12	10	33	1.76
25445--25487	22	2.0	22	85	0	59	34	13	18	32	1.90
25458--25519	22	2.8	21	79	13	54	33	14	16	35	1.89
25553--25670	22	5.2	22	75	13	78	38	9	12	39	1.76
25583--25670	22	4.0	22	81	14	103	36	9	14	39	1.78
25583--25694	43	2.6	44	81	8	129	35	8	17	37	1.82
28108--28197	42	2.1	42	84	8	112	25	16	20	37	1.93
28249--28404	66	2.4	66	85	2	206	30	17	17	35	1.93
28352--28404	24	2.2	25	96	3	99	32	16	13	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28385--28455	34	2.1	34	87	10	101	23	8	22	45	1.80

Tables:   1

The End!