genome.fa.s15029.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015029.1 Corchorus capsularis cultivar CVL-1 contig15050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72243

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126--178	27	2.0	26	88	3	79	49	22	3	24	1.66
177--201	2	12.5	2	100	0	50	48	0	0	52	1.00
986--1039	25	2.2	26	81	15	71	46	0	0	53	1.00
4706--4735	14	2.2	14	94	5	53	66	0	0	33	0.92
5955--6101	33	4.5	33	94	0	249	18	10	47	23	1.80
10757--10803	22	2.2	21	85	14	62	27	10	4	57	1.51
10765--10816	22	2.3	23	83	6	63	30	9	9	50	1.67
10783--11088	22	13.8	22	72	11	130	36	15	9	37	1.81
10827--10912	45	1.9	45	83	4	111	38	16	11	33	1.85
11229--11298	19	3.6	20	82	7	90	25	18	12	42	1.86
11514--11591	21	3.6	23	80	11	85	39	10	10	39	1.73
11542--11606	21	3.2	19	73	18	51	33	13	7	44	1.73
11404--11683	22	12.7	21	67	19	110	36	13	9	40	1.78
11815--11869	22	2.4	22	84	6	74	43	18	7	30	1.77
11859--11942	22	3.8	22	91	0	132	34	15	15	34	1.89
11859--11990	22	6.0	22	83	7	126	36	16	12	34	1.87
16205--16229	12	2.1	12	100	0	50	16	12	16	56	1.68
16264--16421	78	2.0	78	100	0	316	32	13	22	30	1.93
17101--17125	12	2.1	12	100	0	50	48	0	16	36	1.46
18982--19038	30	1.9	30	96	0	105	42	12	22	22	1.87
20169--20249	38	2.1	38	97	0	153	53	12	16	18	1.73
20521--20621	50	2.0	50	96	0	184	31	22	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21372--22897	387	4.0	379	87	5	2129	36	18	17	28	1.93
21400--22897	748	2.0	759	87	3	2197	36	17	17	28	1.93
25009--25149	36	4.0	35	80	6	169	39	23	11	25	1.88
24996--25144	70	2.1	71	94	2	264	38	22	10	28	1.88
27695--27719	6	4.2	6	100	0	50	0	16	16	68	1.22
39778--39878	49	2.1	49	100	0	202	46	13	23	15	1.82
45150--45180	11	2.8	11	95	0	53	0	3	19	77	0.90
45978--46093	21	5.6	21	65	25	61	53	1	1	43	1.21
45967--46093	15	8.5	15	71	21	74	52	1	1	44	1.20
45935--46101	39	4.2	39	71	19	123	52	1	2	43	1.21
45986--46096	13	8.8	13	68	25	69	53	1	1	43	1.22
49838--49915	41	1.9	41	91	0	129	38	1	15	44	1.55
50961--51104	72	2.0	72	91	0	234	27	15	14	42	1.86
53116--53409	109	2.7	109	90	5	450	49	1	11	37	1.49
53692--53821	62	2.0	63	89	7	199	50	0	13	34	1.48
59272--59343	15	4.7	15	76	6	56	33	19	27	19	1.96
59399--59514	53	2.2	53	83	7	146	29	27	6	36	1.83
69967--69991	6	4.2	6	100	0	50	16	20	0	64	1.30
70271--70320	15	3.3	15	83	5	73	16	10	38	36	1.82
70253--70327	31	2.4	32	93	4	127	12	10	38	38	1.77

Tables:   1

The End!