Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015030.1 Corchorus capsularis cultivar CVL-1 contig15051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69157

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
250--368
15
7.9
15
69
23
65
53
1
1
42
1.20
258--371
13
8.8
13
68
25
64
53
1
1
42
1.21
1495--1601
33
3.2
33
80
11
137
12
43
29
14
1.81
1585--1615
15
2.1
15
100
0
62
12
48
32
6
1.67
1721--1946
33
6.9
33
90
1
330
11
32
41
14
1.83
2088--2115
3
9.3
3
100
0
56
67
0
0
32
0.91
2401--2508
54
2.0
54
96
0
198
41
5
16
36
1.72
2988--3027
20
2.0
20
100
0
80
15
10
20
55
1.68
4641--4721
41
2.0
41
100
0
162
24
32
11
32
1.90
17948--17978
2
15.5
2
100
0
62
51
0
0
48
1.00
19602--19628
2
13.5
2
100
0
54
48
0
0
51
1.00
22560--22651
11
7.0
14
64
22
56
33
2
8
55
1.43
22590--22657
26
2.6
26
86
9
102
33
1
10
54
1.43
22666--22725
25
2.5
24
81
5
68
43
3
20
33
1.68
22796--22842
21
2.2
21
84
0
58
44
6
34
14
1.71
24958--25188
116
2.0
113
84
5
266
39
18
12
30
1.87
30588--30746
81
2.0
81
96
0
291
17
28
28
25
1.98
34120--34153
9
3.4
10
88
11
52
11
8
0
79
0.94
34434--34468
16
2.2
16
90
10
54
51
0
0
48
1.00
34436--34470
17
1.9
17
88
11
52
51
0
0
48
1.00
38573--38670
30
3.3
30
88
2
153
8
34
35
21
1.83
41269--41335
26
2.6
25
83
2
80
7
31
38
22
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44157--44244
16
5.6
16
75
11
74
26
15
28
29
1.96
44157--44247
32
2.8
32
86
3
112
25
15
28
30
1.96
44157--44246
15
5.7
15
79
8
81
25
15
27
31
1.96
44363--44393
2
15.5
2
100
0
62
48
0
0
51
1.00
44890--44921
1
32.0
1
100
0
64
100
0
0
0
0.00
47306--47471
31
5.5
30
73
13
144
33
18
19
27
1.96
47340--47439
29
3.4
28
74
10
92
32
18
21
29
1.96
47309--47471
60
2.7
60
92
0
254
34
18
19
27
1.95
47501--47699
31
6.6
30
71
13
131
27
19
18
35
1.94
47532--47694
60
2.7
60
83
4
204
27
19
17
36
1.94
48518--48587
30
2.4
30
83
11
83
15
28
15
40
1.88
48514--48587
29
2.5
29
82
10
89
16
28
17
37
1.91
48757--48828
29
2.4
29
80
11
92
37
18
26
18
1.93
50768--50800
12
2.8
12
95
0
57
36
15
18
30
1.91
51318--51367
24
2.1
24
96
0
91
36
14
22
28
1.92
52943--53023
29
2.7
30
83
7
103
39
12
20
27
1.89
54456--54581
63
2.0
63
96
0
234
17
21
18
42
1.89
64067--64097
2
15.5
2
93
0
53
0
48
0
51
1.00

Tables:   1

The End!