Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015032.1 Corchorus capsularis cultivar CVL-1 contig15053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91407

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
894--1675
130
6.0
130
85
2
929
36
13
16
33
1.88
965--1675
261
2.7
261
89
1
1041
36
14
16
32
1.89
7453--7477
2
12.5
2
100
0
50
0
0
48
52
1.00
16777--16992
67
3.2
67
83
5
269
23
14
19
42
1.88
20654--20736
43
1.9
43
92
0
139
30
25
18
26
1.98
23158--23229
29
2.4
28
90
9
108
25
23
12
38
1.90
23871--23950
29
2.7
29
86
7
99
40
15
20
25
1.90
25773--25813
21
2.0
21
90
0
64
24
26
9
39
1.86
25859--25946
33
2.7
33
78
7
97
18
37
30
13
1.89
28124--28197
29
2.7
27
89
6
112
50
12
9
28
1.71
32899--33171
135
2.0
135
80
4
329
27
13
8
50
1.70
35424--35483
30
2.0
30
93
0
102
38
15
16
30
1.89
37967--37993
2
13.5
2
100
0
54
51
0
0
48
1.00
39718--39792
32
2.5
31
85
8
100
37
18
17
26
1.93
48428--48592
85
1.9
86
88
2
253
35
11
13
39
1.81
78922--78968
2
24.0
2
82
4
60
44
6
0
48
1.28
79069--79343
109
2.5
109
93
4
455
38
11
1
48
1.50
82338--82377
14
2.8
14
96
3
71
35
0
65
0
0.93
84589--84768
93
1.9
93
86
0
252
41
10
21
27
1.84
87125--87149
2
12.5
2
100
0
50
48
0
0
52
1.00
88819--88874
18
3.1
18
81
0
67
35
17
46
0
1.49
88803--88873
24
3.0
23
79
8
70
35
15
46
2
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90226--90252
13
2.1
13
100
0
54
62
7
14
14
1.51

Tables:   1

The End!