Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015033.1 Corchorus capsularis cultivar CVL-1 contig15054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57851

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--37
2
18.5
2
100
0
74
48
0
0
51
1.00
794--850
30
1.9
30
100
0
114
29
15
12
42
1.84
4099--4133
17
2.1
17
94
0
61
34
8
11
45
1.71
10495--10557
31
2.0
31
90
0
99
23
19
28
28
1.98
12071--12344
108
2.5
110
92
5
448
38
10
2
48
1.50
18415--18453
15
2.7
14
80
7
51
48
0
5
46
1.24
20833--20895
29
2.1
29
85
2
81
38
26
12
22
1.90
32390--32427
16
2.4
16
90
0
58
39
7
7
44
1.63
35444--35468
13
1.9
13
100
0
50
32
8
8
52
1.60
47049--47091
21
2.0
21
100
0
86
23
9
32
34
1.87
46904--47272
202
1.8
201
95
0
675
26
16
20
37
1.93
48735--48812
38
2.1
38
90
4
122
28
19
1
51
1.55
49769--49831
29
2.2
29
85
0
81
36
25
7
30
1.84
50129--50158
14
2.1
14
100
0
60
50
26
0
23
1.50
50127--50157
16
1.9
16
93
0
53
51
25
0
22
1.48
51638--51675
19
1.9
19
89
5
58
50
7
13
28
1.69
53715--53749
2
18.0
2
94
5
63
51
0
0
48
1.00
54616--54695
38
2.1
38
84
13
103
58
3
1
36
1.24

Tables:   1

The End!