Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015035.1 Corchorus capsularis cultivar CVL-1 contig15056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64167

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
140--165
12
2.2
12
100
0
52
38
15
46
0
1.46
306--348
23
1.9
22
86
13
61
39
0
4
55
1.20
1698--1740
19
2.3
19
92
8
70
72
0
2
25
0.97
4137--4238
34
3.1
33
91
4
163
22
29
21
26
1.99
10754--10785
2
16.0
2
100
0
64
50
0
0
50
1.00
17827--17856
15
2.0
15
100
0
60
93
0
6
0
0.35
18576--18632
30
1.9
30
89
7
89
28
29
7
35
1.83
22703--22752
25
2.0
25
84
7
66
46
4
26
24
1.70
27960--28014
29
1.9
29
85
3
76
52
0
16
30
1.44
34784--34813
14
2.1
14
93
0
51
86
0
10
3
0.67
35560--35597
19
2.0
19
100
0
76
36
15
21
26
1.93
36529--36564
3
12.0
3
100
0
72
66
0
0
33
0.92
36688--36844
74
2.1
74
88
2
235
21
28
9
41
1.84
41059--41095
2
18.5
2
100
0
74
51
0
0
48
1.00
42739--42781
16
2.7
16
81
0
50
32
0
13
53
1.41
43174--43260
22
3.8
22
73
18
70
21
11
2
64
1.37
43276--43315
17
2.4
17
95
0
71
32
10
2
55
1.47
43916--43978
24
2.6
24
82
0
72
63
1
0
34
1.04
51023--51095
30
2.4
29
80
10
76
35
17
2
43
1.64

Tables:   1

The End!