Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015041.1 Corchorus capsularis cultivar CVL-1 contig15062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78816

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3242--3266
13
1.9
13
100
0
50
48
0
16
36
1.46
7418--7503
31
2.7
31
78
1
91
16
23
26
33
1.95
8302--8363
30
2.1
30
100
0
124
25
12
20
40
1.89
21175--21213
2
19.5
2
83
0
51
51
2
0
46
1.14
23090--23117
2
14.0
2
100
0
56
50
0
0
50
1.00
24795--25092
108
2.8
107
88
6
430
43
7
7
41
1.60
24804--25118
106
3.0
102
76
15
311
44
6
8
40
1.60
25753--25785
16
2.1
16
100
0
66
39
18
12
30
1.87
34655--34697
22
2.0
22
85
0
59
34
13
30
20
1.92
37914--37959
21
2.1
22
84
4
58
39
8
36
15
1.78
38654--38722
34
2.0
34
97
0
129
34
11
15
37
1.84
43879--43914
17
2.2
16
85
9
54
38
11
2
47
1.54
43884--43916
17
1.9
17
100
0
66
36
12
3
48
1.56
44727--44756
2
15.0
2
100
0
60
50
0
0
50
1.00
50625--50652
13
2.2
13
100
0
56
42
7
7
42
1.59
61356--61400
1
45.0
1
100
0
90
0
0
0
100
0.00
75954--76279
180
1.8
181
84
4
453
33
20
4
42
1.71
76672--76702
2
15.5
2
100
0
62
51
0
0
48
1.00
78552--78583
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!