Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015042.1 Corchorus capsularis cultivar CVL-1 contig15063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49838

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7986--8021
13
2.6
14
86
4
56
47
2
13
36
1.58
8162--8190
2
14.5
2
100
0
58
51
0
0
48
1.00
8288--8743
226
2.0
226
98
0
876
37
21
15
26
1.93
8817--8880
31
2.0
32
85
8
87
32
14
3
50
1.58
8898--8948
15
3.6
15
69
15
54
31
9
0
58
1.30
13757--13790
17
2.0
17
100
0
68
29
5
17
47
1.71
24672--24696
2
12.5
2
100
0
50
0
52
0
48
1.00
25568--25600
2
16.5
2
100
0
66
48
0
0
51
1.00
30891--30948
25
2.3
25
82
8
64
25
13
3
56
1.53
31677--31770
19
5.5
18
63
23
51
26
20
12
40
1.88
31677--31775
33
3.0
33
92
0
162
26
21
13
39
1.90
39687--39733
25
1.9
24
83
12
60
21
4
23
51
1.65
39807--39853
25
1.9
24
83
12
60
21
4
23
51
1.65
39552--39867
120
2.6
120
96
1
580
25
7
17
50
1.73
41287--41324
18
2.1
18
100
0
76
26
5
21
47
1.71
43478--43510
2
16.5
2
100
0
66
48
0
0
51
1.00
46099--46128
16
1.9
15
93
6
51
3
26
13
56
1.52
48345--48376
3
10.7
3
100
0
64
34
0
0
65
0.93
48726--48770
20
2.2
20
88
7
65
44
17
15
22
1.86

Tables:   1

The End!