Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015043.1 Corchorus capsularis cultivar CVL-1 contig15064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45864

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2144--2182
14
2.8
14
85
11
53
61
28
10
0
1.28
2144--2182
15
2.7
15
88
7
55
61
28
10
0
1.28
5846--5977
71
1.9
71
100
0
264
26
6
19
46
1.75
5984--6059
29
2.7
28
90
6
118
28
9
11
50
1.70
13580--13684
51
2.1
51
100
0
210
29
15
13
41
1.85
14831--14916
42
2.0
43
97
2
165
36
22
13
27
1.92
15118--15173
28
2.0
28
96
0
103
35
33
10
19
1.87
21921--21945
8
3.1
8
100
0
50
88
0
0
12
0.53
23584--23653
35
2.0
35
100
0
140
31
17
14
37
1.89
24356--24412
17
3.4
17
76
23
50
22
21
19
36
1.95
26607--26638
9
3.6
9
100
0
64
71
0
0
28
0.86
26801--26868
26
2.6
26
95
0
118
35
0
10
54
1.35
26824--26868
15
3.3
15
76
23
62
35
0
11
53
1.37
26905--26930
10
2.6
10
100
0
52
38
0
30
30
1.58
27017--27060
21
2.1
21
91
0
70
31
9
40
18
1.81
42084--42125
1
42.0
1
100
0
84
0
0
0
100
0.00
43778--43803
1
26.0
1
100
0
52
100
0
0
0
0.00
44405--44456
27
1.9
27
84
0
68
38
17
21
23
1.93
45462--45517
27
2.1
27
96
0
103
37
7
10
44
1.67

Tables:   1

The End!