Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015044.1 Corchorus capsularis cultivar CVL-1 contig15065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15788

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
506--549
22
2.0
22
82
8
54
43
11
2
43
1.53
665--1148
22
22.3
22
69
15
213
36
16
9
37
1.81
1228--1279
22
2.4
22
90
3
88
36
11
7
44
1.70
1226--1372
22
6.5
22
71
12
73
33
14
10
41
1.80
1393--1449
22
2.6
22
81
8
64
36
17
5
40
1.72
1435--1492
22
2.6
22
76
10
64
36
20
8
34
1.84
1476--1530
22
2.5
21
82
8
65
30
14
12
41
1.83
1577--1635
22
2.6
22
78
5
64
38
18
8
33
1.81
1898--1935
19
2.0
20
85
15
53
63
2
5
28
1.30
4533--4586
27
2.0
27
96
0
99
40
12
22
24
1.89
5817--5856
20
2.0
20
100
0
80
35
20
20
25
1.96
13660--13711
21
2.4
21
87
3
68
34
11
15
38
1.83
13914--13973
22
2.7
22
82
5
59
41
16
10
31
1.81
13927--14219
22
13.6
20
69
15
135
36
13
9
40
1.77
14080--14225
66
2.2
66
79
9
163
35
14
8
41
1.77
14209--14276
19
3.5
19
83
2
82
26
19
10
44
1.82
14383--14599
22
9.7
22
70
13
131
35
13
9
41
1.77
14383--14530
45
3.3
43
76
11
129
36
12
10
40
1.77
14357--14526
89
1.9
90
80
6
202
35
12
10
41
1.77
14403--14748
22
15.4
22
66
19
103
35
14
9
40
1.79
14821--14951
22
5.8
23
83
7
85
38
16
11
34
1.84
14866--14950
22
3.9
22
93
0
134
34
16
14
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14864--14963
22
4.6
21
86
7
103
32
18
14
36
1.90
15000--15052
19
2.8
18
75
11
52
56
0
5
37
1.23

Tables:   1

The End!