Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015045.1 Corchorus capsularis cultivar CVL-1 contig15066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160013

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112--166
22
2.5
23
82
11
71
38
16
5
40
1.72
341--425
22
3.9
22
93
0
143
35
16
12
35
1.87
287--425
22
6.2
22
81
6
127
38
17
10
34
1.83
538--596
30
1.9
31
93
3
102
49
3
16
30
1.63
3670--3703
2
17.0
2
93
0
59
50
2
0
47
1.16
7069--7100
10
3.1
11
86
13
50
84
0
15
0
0.63
16397--16449
16
3.4
16
76
5
63
47
0
0
52
1.00
16395--16442
25
1.9
25
83
8
62
50
0
0
50
1.00
16389--16473
31
2.7
31
83
5
109
55
1
0
43
1.07
16472--16537
11
6.0
11
78
5
53
57
16
7
18
1.62
26121--26152
2
16.5
2
93
6
57
46
0
0
53
1.00
27836--28319
239
2.0
239
92
0
797
36
16
15
30
1.91
30514--30571
30
1.9
30
92
0
98
12
18
10
58
1.61
32992--33016
2
12.5
2
100
0
50
48
0
0
52
1.00
33777--33887
51
2.2
51
85
3
143
17
10
10
61
1.56
33789--33896
51
2.1
51
89
3
164
14
8
11
65
1.46
33803--33912
51
2.1
52
85
5
143
17
7
13
61
1.53
34792--34847
29
1.9
29
82
7
69
28
16
5
50
1.67
41031--41057
2
13.5
2
100
0
54
48
0
0
51
1.00
42791--42834
21
2.1
21
95
0
79
38
11
27
22
1.88
43068--43104
14
2.8
14
84
12
51
5
18
0
75
0.99
52710--52737
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60817--60916
51
2.0
48
90
5
155
25
12
19
44
1.84
66294--66357
26
2.5
26
100
0
128
42
7
9
40
1.66
67088--67127
19
2.1
19
85
0
53
45
17
15
22
1.85
67363--67446
27
3.0
28
92
5
134
33
17
34
14
1.90
67927--67991
32
2.0
32
90
0
103
58
6
9
26
1.52
70076--70114
14
2.8
14
80
0
51
12
20
10
56
1.65
70360--70404
23
2.0
23
86
0
63
33
26
11
28
1.91
70450--70552
31
3.3
31
87
0
134
24
11
28
35
1.90
79141--79229
36
2.6
33
81
10
92
56
17
4
21
1.59
90137--90172
18
2.0
18
100
0
72
22
11
38
27
1.88
91345--91423
30
2.5
33
79
14
101
35
10
13
40
1.79
125931--125986
18
3.1
18
86
0
85
32
10
17
39
1.84
125931--126006
36
2.1
36
85
9
102
32
11
18
36
1.87
133828--133866
13
2.9
13
84
3
51
56
12
10
20
1.65
150329--150373
12
3.6
12
84
6
54
73
2
22
2
1.05
150335--150373
19
2.1
19
85
0
51
74
2
23
0
0.94
156537--156691
77
2.1
73
81
7
177
25
19
25
29
1.99
159825--159882
27
2.1
27
83
6
71
20
15
6
56
1.62
159954--160013
2
30.0
2
100
0
120
50
0
50
0
1.00

Tables:   1

The End!