Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015046.1 Corchorus capsularis cultivar CVL-1 contig15067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81549

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1902--1934
2
16.5
2
87
12
50
48
3
0
48
1.17
1962--2058
31
3.1
31
91
2
151
28
20
4
46
1.69
2367--2404
19
2.0
20
85
15
53
28
5
2
63
1.30
2570--2734
22
7.3
22
76
10
127
31
10
20
37
1.87
2844--3151
22
13.8
21
70
17
135
40
9
14
35
1.78
2983--3173
44
4.4
44
75
7
167
42
9
14
34
1.77
3004--3151
66
2.2
65
79
4
154
39
10
15
34
1.81
3297--3844
22
25.0
22
65
15
109
39
10
15
35
1.81
3646--3710
23
2.9
22
79
4
67
32
13
15
38
1.87
4358--4891
43
12.3
44
75
8
396
38
13
15
32
1.87
4358--4867
22
23.5
22
75
8
330
39
14
15
31
1.87
4358--4867
64
7.8
65
74
7
383
39
14
15
31
1.87
4911--5904
333
3.0
327
81
6
1032
37
14
14
33
1.87
12803--12831
2
14.5
2
100
0
58
48
0
0
51
1.00
18912--18947
2
18.0
2
100
0
72
50
50
0
0
1.00
28590--28667
39
2.0
39
100
0
156
33
15
7
43
1.75
47095--47119
2
12.5
2
100
0
50
52
0
0
48
1.00
49705--49811
53
2.0
53
96
0
196
41
6
11
41
1.67
53281--53339
19
2.9
22
78
19
74
22
10
22
45
1.81
58038--58102
32
2.1
32
82
8
80
38
16
4
40
1.70
60968--61013
22
2.1
22
88
4
67
69
4
26
0
1.07
60964--61017
21
2.6
20
82
8
72
64
3
31
0
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70880--70923
21
2.1
21
83
8
54
54
9
2
34
1.44
72167--72242
31
2.5
31
82
0
89
34
22
27
15
1.95
77380--77404
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!