Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015049.1 Corchorus capsularis cultivar CVL-1 contig15070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17852

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1248--1348
51
2.0
51
98
0
193
14
27
24
32
1.95
1299--1613
168
1.9
168
95
0
576
24
25
21
27
2.00
3297--3332
2
18.0
2
100
0
72
50
0
0
50
1.00
5784--5813
7
4.3
7
91
0
51
53
16
30
0
1.44
5900--5959
30
2.0
30
96
0
111
35
8
13
43
1.74
6192--6421
121
1.9
121
93
1
399
27
13
20
38
1.90
8174--8199
2
13.0
2
100
0
52
50
0
0
50
1.00
10114--10143
2
15.0
2
100
0
60
0
0
50
50
1.00
10473--10546
27
2.7
27
85
4
96
32
16
20
31
1.94
10872--10936
27
2.4
27
82
5
69
32
15
21
30
1.94
10480--11065
195
3.0
195
96
0
1082
26
21
18
33
1.96
11260--11319
30
2.0
30
100
0
120
33
10
13
43
1.77
11555--11791
119
2.0
118
95
0
429
28
13
20
37
1.91
12668--12693
2
13.0
2
100
0
52
50
0
0
50
1.00
12901--12925
13
1.9
13
100
0
50
44
8
8
40
1.63
14140--14263
22
5.7
21
79
9
108
40
13
10
35
1.79
14138--14268
44
3.0
45
78
11
139
39
15
10
34
1.82
14140--14262
66
1.9
65
81
8
151
40
13
10
35
1.78
14373--14422
26
1.9
26
83
0
64
30
34
6
30
1.81
14494--14552
22
2.8
20
80
10
57
35
8
16
38
1.80
15808--16023
118
1.8
118
94
0
387
34
6
23
35
1.81
16503--16575
32
2.3
32
83
2
94
32
21
16
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16503--16573
16
4.5
15
81
8
70
33
22
16
26
1.96
17501--17537
2
19.0
2
88
5
58
45
2
0
51
1.15

Tables:   1

The End!