Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015053.1 Corchorus capsularis cultivar CVL-1 contig15074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21638

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
868--1002
50
2.6
52
89
4
220
45
14
20
19
1.85
1474--1521
17
2.7
18
87
6
62
8
22
58
10
1.58
2048--2095
7
6.7
7
84
11
62
85
14
0
0
0.60
2048--2094
6
7.8
6
90
9
62
85
14
0
0
0.61
2037--2104
17
3.9
17
76
14
66
83
10
5
0
0.79
2037--2096
14
4.1
14
79
8
66
85
11
3
0
0.72
2049--2093
24
2.0
23
91
8
74
84
15
0
0
0.62
8771--8827
18
3.1
18
76
14
62
31
1
1
64
1.13
8794--8828
13
2.7
13
86
0
52
28
2
2
65
1.21
13470--13513
20
2.2
20
88
8
63
31
0
0
68
0.90
13476--13516
18
2.2
19
91
4
66
31
0
0
68
0.90
13582--13612
3
10.3
3
100
0
62
0
0
32
67
0.91
14483--14720
119
2.0
118
93
0
404
28
19
22
30
1.98
15897--15971
27
2.8
27
91
0
123
46
24
10
18
1.80
19859--20028
90
1.9
92
81
10
215
28
20
16
35
1.94
20578--20606
2
15.0
2
92
7
51
48
0
0
51
1.00
21388--21419
3
10.7
3
93
0
55
0
3
34
62
1.11

Tables:   1

The End!