Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015057.1 Corchorus capsularis cultivar CVL-1 contig15078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31207

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1150--1185
19
1.9
18
88
5
54
33
22
2
41
1.68
4445--4480
18
2.1
17
94
5
63
63
8
16
11
1.49
5081--5114
11
3.1
11
86
0
50
52
14
0
32
1.42
6820--6855
8
4.5
8
86
13
56
88
11
0
0
0.50
6819--6855
17
2.2
17
95
4
67
89
10
0
0
0.49
7666--7762
37
2.6
37
82
6
108
24
27
20
26
1.99
7856--7992
38
3.6
38
84
2
161
35
19
15
29
1.93
7934--8114
60
3.0
60
90
1
272
34
18
14
32
1.92
8054--8150
38
2.6
37
88
6
142
35
19
13
31
1.91
7901--8199
158
1.9
158
95
0
535
34
18
15
31
1.92
7994--8250
98
2.6
98
93
1
424
33
19
15
31
1.94
8152--8284
38
3.5
38
88
0
194
30
20
18
30
1.96
8314--8372
15
3.7
15
82
12
82
30
22
1
45
1.62
8376--8406
15
2.1
15
93
0
53
32
22
3
41
1.70
8403--8596
95
2.1
94
92
1
316
21
29
15
32
1.95
8403--8596
47
4.1
47
93
1
307
21
29
15
32
1.95
12387--12489
49
2.1
49
85
3
136
21
30
14
33
1.93
12549--12674
63
2.0
64
85
1
173
25
23
17
33
1.96
12576--12858
62
4.5
62
85
3
311
25
24
16
33
1.96
14225--14259
11
3.1
11
87
4
52
17
22
14
45
1.84
15079--15110
17
2.0
17
88
11
50
81
6
3
9
0.97
16096--16140
15
2.9
16
80
6
56
13
15
31
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17772--17832
30
2.0
31
96
3
115
31
22
6
39
1.80
18600--19379
389
2.0
389
99
0
1533
30
26
14
28
1.95
20227--20261
14
2.4
14
95
4
61
54
0
11
34
1.37
22742--22780
2
19.5
2
89
10
62
48
0
2
48
1.15
23073--23223
76
2.0
75
84
6
198
37
13
25
23
1.91

Tables:   1

The End!