Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015063.1 Corchorus capsularis cultivar CVL-1 contig15084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58410

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
510--538
12
2.5
12
94
5
51
31
31
20
17
1.96
2549--2595
21
2.2
21
100
0
94
34
4
17
44
1.68
5154--5195
12
3.8
11
81
9
50
21
4
16
57
1.58
6813--6848
19
1.9
18
88
5
54
33
22
2
41
1.68
11534--11572
2
19.0
2
89
5
60
46
5
0
48
1.24
11792--11893
38
2.7
37
79
7
116
15
18
11
53
1.71
11843--12707
436
2.0
439
94
1
1529
35
11
9
43
1.72
12495--12539
14
3.2
14
85
14
58
46
2
0
51
1.13
12785--12822
19
2.0
20
85
15
53
28
2
5
63
1.30
13100--13158
22
2.6
23
81
8
75
35
6
16
40
1.76
13100--13165
22
2.9
22
78
13
71
33
6
19
40
1.76
13201--14062
22
38.7
22
66
14
189
38
10
16
34
1.83
13363--13463
21
4.5
24
77
15
94
44
9
12
32
1.76
22975--23042
12
5.5
12
91
3
100
38
16
20
25
1.92
25228--25273
14
3.3
14
84
0
65
13
19
30
36
1.90
30708--30880
21
8.4
20
73
18
126
23
20
5
50
1.68
30708--30896
42
4.6
43
76
15
175
22
20
4
52
1.65
30771--30847
35
2.1
37
90
4
122
24
18
5
51
1.66
30805--30896
22
4.1
22
84
6
123
20
18
4
56
1.58
30868--31076
27
7.8
26
80
13
185
21
19
2
56
1.55
30827--31077
53
4.8
53
79
14
190
21
19
3
55
1.57
30953--31076
55
2.3
53
87
6
169
25
20
3
51
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31061--31105
21
2.1
21
83
0
54
26
22
2
48
1.62
31067--31334
36
7.5
36
92
1
405
20
23
2
53
1.58
31429--31686
32
7.8
32
77
15
199
19
25
3
51
1.63
31389--31613
72
3.3
71
77
10
227
20
24
3
52
1.62
31618--31668
16
3.1
17
73
21
63
17
27
3
50
1.63
31483--31701
63
3.4
65
83
5
243
18
25
5
50
1.67
35146--35215
25
2.7
26
86
4
97
40
27
14
18
1.89
35291--35337
14
3.4
14
79
5
51
12
21
27
38
1.90
36463--36510
23
2.1
23
84
7
62
27
12
16
43
1.84
36762--36806
22
2.0
22
100
0
90
44
8
20
26
1.80
40900--40949
2
25.0
2
100
0
100
50
0
50
0
1.00
41787--41814
13
2.2
13
100
0
56
92
0
7
0
0.37
41780--41807
11
2.5
11
100
0
56
92
0
7
0
0.37
42723--42760
7
5.4
7
81
12
51
39
0
0
60
0.97
43139--43178
17
2.4
18
80
16
50
17
25
0
57
1.40
43343--43373
3
10.3
3
100
0
62
32
0
0
67
0.91
50424--50477
8
7.0
8
74
21
53
44
0
0
55
0.99
50538--50641
22
4.8
22
76
7
106
40
10
9
39
1.73
50539--50641
43
2.4
44
83
4
129
40
9
9
39
1.71
50606--50687
43
1.9
43
87
9
123
39
13
9
37
1.78
50602--50714
22
5.2
21
74
12
68
35
17
8
38
1.81

Tables:   1

The End!