genome.fa.s15066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015066.1 Corchorus capsularis cultivar CVL-1 contig15087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38394

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3162--3194	15	2.2	15	100	0	66	27	15	42	15	1.86
6124--6258	69	2.0	69	85	2	182	47	16	13	22	1.81
6449--6491	22	2.0	22	90	0	68	23	11	27	37	1.89
6666--6774	31	3.6	29	79	9	121	36	22	9	32	1.85
8674--8775	31	3.4	29	77	8	80	32	5	20	41	1.76
9694--9853	86	1.8	86	84	4	214	48	3	27	20	1.66
13717--13942	37	6.1	37	87	4	314	42	7	22	28	1.79
13942--14200	41	6.6	41	76	10	256	44	11	20	23	1.85
14034--14252	35	5.9	35	72	13	143	44	12	18	24	1.85
13974--14237	76	3.5	76	87	1	343	43	11	20	24	1.85
13950--14201	117	2.2	114	80	9	269	44	12	19	23	1.85
14313--14494	37	5.1	37	85	3	232	37	8	29	24	1.84
14315--14494	74	2.5	74	88	7	266	38	8	28	25	1.84
14328--14520	74	2.7	71	86	10	261	37	9	27	24	1.87
14510--14642	36	3.7	36	91	3	205	38	9	22	29	1.86
14512--14663	36	4.2	36	88	4	198	39	8	21	30	1.83
14510--14654	73	2.0	73	89	1	220	39	8	22	28	1.85
17500--17802	60	5.0	60	88	4	378	33	13	17	35	1.88
17879--17907	2	14.5	2	100	0	58	51	0	0	48	1.00
18858--18892	3	11.7	3	100	0	70	68	0	0	31	0.90
33247--33323	30	2.5	31	77	10	79	25	27	16	29	1.97
33361--33405	18	2.6	17	81	18	58	13	8	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33379--33416	11	3.5	11	88	0	58	5	13	0	81	0.85
34173--34211	18	2.1	19	86	13	55	48	0	0	51	1.00
34809--34883	30	2.6	29	87	8	109	30	9	16	44	1.79
37751--38037	47	6.9	40	84	6	253	13	27	20	38	1.90
38049--38390	50	6.9	50	84	3	422	14	27	19	38	1.91
38034--38390	99	3.6	99	85	5	477	15	26	18	39	1.90

Tables:   1

The End!