Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015068.1 Corchorus capsularis cultivar CVL-1 contig15089, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27385

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38--94
25
2.2
26
78
9
62
31
8
3
56
1.47
50--97
25
1.9
25
91
0
78
25
8
6
60
1.49
84--124
22
1.9
22
90
5
66
48
0
7
43
1.30
2531--2578
22
2.2
22
84
0
60
37
12
10
39
1.77
2657--3043
22
17.9
21
68
16
97
34
16
9
39
1.82
2768--2846
23
3.5
23
78
11
83
36
16
10
36
1.82
2651--3034
44
8.8
44
71
16
198
34
16
9
39
1.81
3140--3264
22
5.7
22
74
12
87
32
12
10
44
1.77
3116--3281
88
1.9
88
81
5
201
33
12
10
43
1.76
3204--3342
22
6.2
23
78
9
92
34
15
11
38
1.83
3396--3534
22
6.3
22
70
15
83
37
20
7
35
1.80
3567--3739
22
7.8
22
74
11
104
37
17
10
34
1.84
3575--3718
44
3.2
44
82
7
150
36
16
11
35
1.86
3635--3728
44
2.1
44
84
3
118
37
18
10
34
1.85
3879--3916
20
1.9
19
85
15
51
63
0
5
31
1.17
4174--4217
15
3.2
13
84
15
61
38
0
2
59
1.10
4864--4921
29
1.9
31
89
6
93
48
3
17
31
1.64
10305--10573
141
1.9
136
90
5
423
34
23
11
30
1.90
12296--12349
27
2.0
27
85
3
72
53
20
1
24
1.55
17148--17183
18
2.1
18
89
5
56
8
13
0
77
0.98
17186--17239
21
2.6
21
87
0
90
29
22
9
38
1.85
21511--21547
17
2.2
17
100
0
74
51
21
5
21
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21732--22363
219
2.9
220
86
4
890
35
19
8
36
1.82
22408--22497
11
7.5
11
68
24
58
66
3
12
17
1.37
22525--22631
33
3.2
33
97
0
196
62
4
24
8
1.43
24965--25046
22
3.7
22
80
9
96
39
10
10
39
1.76
24965--25092
44
2.9
43
81
2
130
39
13
10
36
1.78

Tables:   1

The End!