Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015069.1 Corchorus capsularis cultivar CVL-1 contig15090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43016

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1494--1569
31
2.4
32
86
4
111
22
17
23
36
1.94
2777--2922
70
2.1
70
96
0
265
40
14
16
28
1.88
4164--4262
32
3.1
32
85
2
119
18
11
33
37
1.86
4446--4487
22
1.9
22
85
0
57
26
9
14
50
1.73
16070--16188
60
2.0
60
98
0
229
60
11
11
15
1.59
17871--17895
6
4.2
6
100
0
50
16
0
0
84
0.63
20675--20765
46
2.0
46
100
0
182
46
10
2
40
1.51
21983--22106
40
3.2
40
60
17
96
50
0
12
37
1.41
21966--22212
78
3.2
78
94
1
415
49
0
13
36
1.45
22815--23107
146
2.0
146
96
0
541
35
18
9
36
1.84
24794--24831
15
2.5
16
83
12
53
60
2
0
36
1.11
26292--26338
22
2.1
22
84
0
58
27
12
0
59
1.34
26230--26414
92
2.0
92
94
2
327
34
14
0
51
1.46
26986--27018
15
2.1
16
88
5
50
12
21
30
36
1.90
30220--30280
29
2.1
29
84
3
77
49
4
3
42
1.40
30365--30432
26
2.8
25
74
24
72
41
0
1
57
1.08
30382--30431
25
2.1
24
85
7
66
42
0
0
58
0.98
39350--39390
21
1.9
22
85
5
57
53
0
7
39
1.29
41533--41575
12
3.5
13
87
9
63
39
16
18
25
1.91
42608--42643
10
3.6
10
92
0
63
30
5
22
41
1.76
42605--42643
20
2.0
20
100
0
78
30
5
20
43
1.73
42986--43016
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!